PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG029170.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 263aa MW: 27764.3 Da PI: 9.3831

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG029170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.5e-08	60	85	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6BG029170.1 60 KTKLCNKYNTAEGCKWGDKCHFAHGE 85 8***********************96 PP
2	zf-CCCH	35.9	1.3e-11	229	254	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6BG029170.1 229 FKTKLCDNFTK-GSCTFGDRCHFAHGE 254 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MRDTAGCPFG EGCHFLHYFP GGQQAVAKMS NLGGQAFAHP QGRMPTGSAV PDGPPTPTVK 60 TKLCNKYNTA EGCKWGDKCH FAHGERELGK HTFINNSMPP HMGPRPTGHF GPPAMPSPAM 120 TTPAGFGASS TAKVSVDASL VGGIIGRDGV NTKQISRVTG AKLAIRDHES NKALKNIELE 180 GTFDQINNAS AMLRELFFRI SGGANTPPPS ENLAGGYHRG GAGGQGRNFK TKLCDNFTKG 240 SCTFGDRCHF AHGENELRKS AAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	2e-55	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG029170.1