PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG028070.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 168aa MW: 19347 Da PI: 9.1049

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG028070.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87	1e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstg+++eyss TRIDC6BG028070.5 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGRMFEYSS 59 79***********************************************96 PP
2	K-box	62.9	1.2e-21	71	156	1	85
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 yq++++++ e ++ ++ e++++++e+e+L +R++ G+dL+sLsl + + +eqqLe s+ k+R++K++ll +q+++l++k TRIDC6BG028070.5 71 YQNATNSQfEEINHDQQIFVEMTRMRNEMEKLDGAIRRYTGDDLSSLSLADVNDIEQQLEFSVAKVRARKHQLLNQQLDNLRRKVY 156 6777777777778889999****************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGRMFEYSSP 60 ASSLRDLIEQ YQNATNSQFE EINHDQQIFV EMTRMRNEME KLDGAIRRYT GDDLSSLSLA 120 DVNDIEQQLE FSVAKVRARK HQLLNQQLDN LRRKVYNELS IAHFGICY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	3e-41	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG028070.5