PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG024760.9
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 566aa    MW: 64031.5 Da    PI: 8.8127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG024760.9genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-24126227199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   +
  TRIDC6BG024760.9 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVLFI--W 214
                       99*****************************86555544..8************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  TRIDC6BG024760.9 215 NDNNQLLLGIRRA 227
                       777778***9997 PP
2Auxin_resp121.65.9e-40252335183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6BG024760.9 252 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 335
                       79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    
MPSSQTIFPF SVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE QVSASTNKEM  60
ESQIPNYPNL PAQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF LPAELGNASK  120
QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD LHGNEWKFRH  180
IFRGQPKRHL LTTGWSIFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS QTVMPSSVLS  240
SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR ISVGMRFRML  300
FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
YPMYSSPFPM RLKRPWPTGL RGKEDDLTSS LMWLRDGANP GFQSFNFGGL GMSPWMQPRM  420
DSSLLGLQPD MYQAMSAAAF QNTTKQVSPT LLQFQQPQNI AGRSALLSSQ ILQQVQPQFQ  480
EMHHQNINDS AIQGHNQPEY LQQQLQRCQS FNGQKSPLPQ QQESHHQHQQ QQSQCIQFQR  540
SHSSRTFKTE ISALFLHRIS RPCMTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein