PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG024760.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 858aa    MW: 95302.5 Da    PI: 5.9803
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG024760.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-2367168199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   +
  TRIDC6BG024760.2  67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVLFI--W 155
                       99*****************************86555544..8************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  TRIDC6BG024760.2 156 NDNNQLLLGIRRA 168
                       777778***9997 PP
2Auxin_resp120.81.1e-39193276183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6BG024760.2 193 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 276
                       79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    
MESQIPNYPN LPAQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGNAS  60
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELMAK DLHGNEWKFR  120
HIFRGQPKRH LLTTGWSIFI SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR SQTVMPSSVL  180
SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM  240
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  300
TYPMYSSPFP MRLKRPWPTG LPSLYGGKED DLTSSLMWLR DGANPGFQSF NFGGLGMSPW  360
MQPRMDSSLL GLQPDMYQAM SAAAFQNTTK QVSPTLLQFQ QPQNIAGRSA LLSSQILQQV  420
QPQFQEMHHQ NINDSAIQGH NQPEYLQQQL QRCQSFNGQK SPLPQQQESH HQHQQQQSQC  480
MQTPQHQQMQ EQKHSPDFQC VPNGLSVFSQ LSSTNQSPPS TLQTVSAFSQ QQNLQDRNIS  540
SLSPSNIPSM HDTLRPFPSE AGSNLQGVPR TTPLPVSDPW SSKRVAMESV IPSSSHVNSS  600
HIQQLDSAPS NIPQSSSLAP LPGRECLVDQ DGNSDNQNHL LFGVNIDSQS LLMQGGIPSL  660
QEDNGCIASL QDDNDSSTIP YSTCNFLSPS QNDFPLNEAL ASSGCLDESG YASFSENSDH  720
VNQSTAAFVK VYKSGTFGRL LDITKFSSYH ELRSEVGHLF GLEGQLEDPA RSGWQLVFVD  780
REDDILLVGD DPWQEFVNSV SCIKILTPQE VQQMGKQGID LLSSAPARML GNSCDNYAGR  840
QESRSLSTVI ASVGSVEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein