PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG024760.13
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 598aa    MW: 67679.7 Da    PI: 8.7018
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG024760.13genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.4e-24131232199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   
  TRIDC6BG024760.13 131 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVLFI-- 218
                        99*****************************86555544..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  TRIDC6BG024760.13 219 WNDNNQLLLGIRRA 232
                        7777778***9997 PP
2Auxin_resp121.56.4e-40257340183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6BG024760.13 257 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 340
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    
LYISFMPSSQ TIFPFSVSEE HKCLNSELWH ACAGPLVSLP AVGSRVLYFP QGHSEQVSAS  60
TNKEMESQIP NYPNLPAQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPQE LKDPFLPAEL  120
GNASKQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFTQQPPAQE LMAKDLHGNE  180
WKFRHIFRGQ PKRHLLTTGW SIFISAKRLV AGDSVLFIWN DNNQLLLGIR RANRSQTVMP  240
SSVLSSDSMH IGLLAAAAHA ASTNSRFTIF YNPRASPSEF VIPLAKYVKA VYHTRISVGM  300
RFRMLFETEE SSVRRYMGTI TGISDLDPAR WPNSHWRSVK VGWDESTAGE RQPRVSLWEI  360
EPLTTYPMYS SPFPMRLKRP WPTGLPSLYG TSGKEDDLTS SLMWLRDGAN PGFQSFNFGG  420
LGMSPWMQPR MDSSLLGLQP DMYQAMSAAA FQNTTKQVSP TLLQFQQPQN IAGRSALLSS  480
QILQQVQPQF QEMHHQNIND SAIQGHNQPE YLQQQLQRCQ SFNGQKSPLP QQQESHHQHQ  540
QQQSQCMQTP QHQQIFPPPI SLHLPHCRQF QRSHSSRTFK TEISALFLHR ISRPCMTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein