PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6BG024760.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 766aa MW: 85052.2 Da PI: 6.5385 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1.1e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F TRIDC6BG024760.11 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVLFI-- 213 99*****************************86555544..8************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ TRIDC6BG024760.11 214 WNDNNQLLLGIRRA 227 7777778***9997 PP | |||||||
2 | Auxin_resp | 121 | 9.1e-40 | 252 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k TRIDC6BG024760.11 252 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 335 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 766 aa Download sequence |
MPSSQTIFPF SVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE QVSASTNKEM 60 ESQIPNYPNL PAQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF LPAELGNASK 120 QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD LHGNEWKFRH 180 IFRGQPKRHL LTTGWSIFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS QTVMPSSVLS 240 SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR ISVGMRFRML 300 FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT 360 YPMYSSPFPM RLKRPWPTGL PSLYGTSGKE DDLTSSLMWL RDGANPGFQS FNFGGLGMSP 420 WMQPRMDSSL LGLQPDMYQA MSAAAFQNTT KQVSPTLLQF QQPQNIAGRS ALLSSQILQQ 480 VQPQFQEMHH QNINDSAIQG HNQPEYLQQQ LQRCQSFNGQ KSPLPQQQES HHQHQQQQSQ 540 CMQTPQHQQM QEQKHSPDFQ CVPNGLSVFS QLSSTNQSPP STLQTVSAFS QQQNLQDRNI 600 SSLSPSNIPS MHDTLRPFPS EAGSNLQGVP RTTPLPVSDP WSSKRVAMES VIPSSSHVNS 660 SHIQQLDSAP SNIPQSSSLA PLPGRECLVD QDGNSDNQNH LLFGVNIDSQ SLLMQGGIPS 720 LQEDNGCIAS LQDDNDSSTI PYSTCNFLSP SQNDFPLNEA LASSGC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6BG024760.11 |