PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG024760.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 927aa    MW: 102427 Da    PI: 5.8572
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG024760.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23136237199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   +
  TRIDC6BG024760.1 136 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSIFISAKRLVAGDSVLFI--W 224
                       99*****************************86555544..8************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  TRIDC6BG024760.1 225 NDNNQLLLGIRRA 237
                       777778**99997 PP
2Auxin_resp120.61.2e-39262345183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6BG024760.1 262 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 345
                       79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    
MNLSPSAAAG GGLPDQPASP EVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE  60
QVSASTNKEM ESQIPNYPNL PAQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF  120
LPAELGNASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD  180
LHGNEWKFRH IFRGQPKRHL LTTGWSIFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS  240
QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR  300
ISVGMRFRML FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV  360
SLWEIEPLTT YPMYSSPFPM RLKRPWPTGL PSLYGGKEDD LTSSLMWLRD GANPGFQSFN  420
FGGLGMSPWM QPRMDSSLLG LQPDMYQAMS AAAFQNTTKQ VSPTLLQFQQ PQNIAGRSAL  480
LSSQILQQVQ PQFQEMHHQN INDSAIQGHN QPEYLQQQLQ RCQSFNGQKS PLPQQQESHH  540
QHQQQQSQCM QTPQHQQMQE QKHSPDFQCV PNGLSVFSQL SSTNQSPPST LQTVSAFSQQ  600
QNLQDRNISS LSPSNIPSMH DTLRPFPSEA GSNLQGVPRT TPLPVSDPWS SKRVAMESVI  660
PSSSHVNSSH IQQLDSAPSN IPQSSSLAPL PGRECLVDQD GNSDNQNHLL FGVNIDSQSL  720
LMQGGIPSLQ EDNGCIASLQ DDNDSSTIPY STCNFLSPSQ NDFPLNEALA SSGCLDESGY  780
ASFSENSDHV NQSTAAFVKV YKSGTFGRLL DITKFSSYHE LRSEVGHLFG LEGQLEDPAR  840
SGWQLVFVDR EDDILLVGDD PWQEFVNSVS CIKILTPQEV QQMGKQGIDL LSSAPARMLG  900
NSCDNYAGRQ ESRSLSTVIA SVGSVEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein