PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG020370.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1079aa MW: 120591 Da PI: 6.3868

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG020370.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.4	2.4e-22	80	181	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F ++ TRIDC6BG020370.9 80 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RD 169 99****************************9999986.*********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ TRIDC6BG020370.9 170 EKQQLLLGIRRA 181 88889**997 PP
2	Auxin_resp	114.1	1.3e-37	206	289	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ e+e+ +rr++Gt++g+sdldpvrW+nS+WrsL+ TRIDC6BG020370.9 206 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCEMEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 289 799******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1079 aa Download sequence
HSEQQVAASM QKDVEAHVPS YPNLPSKLIC LLHSVTLQAD PDTDEVYAQM TLQPVNTYAK 60 EALQLSELAL RQARPQMEFF CKTLTASDTS THGGFSVPRR AAEKIFPSLD FSLQPPCQEL 120 QARDIHDNVW TFRHIFRGQP KRHLLTTGWS LFVSGKKLFA GDSVIFVRDE KQQLLLGIRR 180 ANRQPTNISS SVLSSDSMHI GVLAAAAHAS ANTSPFTIFY NPRASPTEFV IPFAKYQKAM 240 YSNQISLGMR FRMMCEMEEL GTRRYMGTIT GISDLDPVRW KNSQWRSLQV GWDESAAGER 300 RNRVSIWEIE PLAAPFFICP QPFFGVKRPR QLDDESLEME SLLKRAMPWL GEEVCIKDPQ 360 TQSVTMPGLS LVQWMNMNRQ QSSSLASTAM QSEYYRSASN PAMQNIGAAD LARQLYMQNH 420 LLQQNSMQFN PPKLHQQMKP INDLSNAALP LNQLGAIRNH QDQKQDQQRQ QQSSIQAIPL 480 SQAHPQTNNV QAQVILQNQM QQQQQQKQPP PSPTQNQHGS SGQHLLQSHQ LQDQNLQMQQ 540 QQLLLHQQLQ QQQQQQLNKL PGQLANLASQ QTQLSEQELH LQLLQKLQQQ SLMSQSAVTL 600 SRLPIIQEQQ NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS SLQTTQLPPP IQQEQQQQKP 660 SQKQVAPTYV SEAAFAQISS TSVIPKTGNT MIVPGAAQSA VTEEIPSCST SPSTANGNHL 720 AQPTIGRNDH CKVSTEKVPH SIAQMSILTP IEAVSVTPVT TKELPKLNNG VKSSAITSKL 780 PNVVSGLQNF MNNALPTDNL ETASSATSLW PSQTDGLLHQ GFATSNFNQH QMFKDELPDV 840 EIQGVDPSNS ALFGMNNDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYQMQKDARQ 900 EISTSMVSQS FGQSDMAFNS IDSAINDGAL MNRSSWPPAA PPQRMRTFTK VYKRGAVGRS 960 IDIGRFSGYG ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV 1020 KCIRILSPQE VQKMSLDGDL GSNVLPNQAC SSSDGGNTWK PRYEQNSGNP SIGPYDQFE

Sequence ? help Back to Top

Protein Sequence Length: 1079 aa Download sequence

HSEQQVAASM QKDVEAHVPS YPNLPSKLIC LLHSVTLQAD PDTDEVYAQM TLQPVNTYAK  60
EALQLSELAL RQARPQMEFF CKTLTASDTS THGGFSVPRR AAEKIFPSLD FSLQPPCQEL  120
QARDIHDNVW TFRHIFRGQP KRHLLTTGWS LFVSGKKLFA GDSVIFVRDE KQQLLLGIRR  180
ANRQPTNISS SVLSSDSMHI GVLAAAAHAS ANTSPFTIFY NPRASPTEFV IPFAKYQKAM  240
YSNQISLGMR FRMMCEMEEL GTRRYMGTIT GISDLDPVRW KNSQWRSLQV GWDESAAGER  300
RNRVSIWEIE PLAAPFFICP QPFFGVKRPR QLDDESLEME SLLKRAMPWL GEEVCIKDPQ  360
TQSVTMPGLS LVQWMNMNRQ QSSSLASTAM QSEYYRSASN PAMQNIGAAD LARQLYMQNH  420
LLQQNSMQFN PPKLHQQMKP INDLSNAALP LNQLGAIRNH QDQKQDQQRQ QQSSIQAIPL  480
SQAHPQTNNV QAQVILQNQM QQQQQQKQPP PSPTQNQHGS SGQHLLQSHQ LQDQNLQMQQ  540
QQLLLHQQLQ QQQQQQLNKL PGQLANLASQ QTQLSEQELH LQLLQKLQQQ SLMSQSAVTL  600
SRLPIIQEQQ NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS SLQTTQLPPP IQQEQQQQKP  660
SQKQVAPTYV SEAAFAQISS TSVIPKTGNT MIVPGAAQSA VTEEIPSCST SPSTANGNHL  720
AQPTIGRNDH CKVSTEKVPH SIAQMSILTP IEAVSVTPVT TKELPKLNNG VKSSAITSKL  780
PNVVSGLQNF MNNALPTDNL ETASSATSLW PSQTDGLLHQ GFATSNFNQH QMFKDELPDV  840
EIQGVDPSNS ALFGMNNDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYQMQKDARQ  900
EISTSMVSQS FGQSDMAFNS IDSAINDGAL MNRSSWPPAA PPQRMRTFTK VYKRGAVGRS  960
IDIGRFSGYG ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV  1020
KCIRILSPQE VQKMSLDGDL GSNVLPNQAC SSSDGGNTWK PRYEQNSGNP SIGPYDQFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.2	1e-179	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG020370.9