PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG020370.17

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 374aa MW: 42015.3 Da PI: 9.5486

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG020370.17	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.6	4.7e-23	96	197	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC6BG020370.17 96 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--R 184 99****************************9999986.*********************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ TRIDC6BG020370.17 185 DEKQQLLLGIRRA 197 688889**997 PP
2	Auxin_resp	116.2	2.8e-38	222	305	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ e+e+ +rr++Gt++g+sdldpvrW+nS+WrsL+ TRIDC6BG020370.17 222 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCEMEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 305 799******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
LVSLPPVGSL VVYFPQGHSE QVAASMQKDV EAHVPSYPNL PSKLICLLHS VTLQADPDTD 60 EVYAQMTLQP VNTYAKEALQ LSELALRQAR PQMEFFCKTL TASDTSTHGG FSVPRRAAEK 120 IFPSLDFSLQ PPCQELQARD IHDNVWTFRH IFRGQPKRHL LTTGWSLFVS GKKLFAGDSV 180 IFVRDEKQQL LLGIRRANRQ PTNISSSVLS SDSMHIGVLA AAAHASANTS PFTIFYNPRA 240 SPTEFVIPFA KYQKAMYSNQ ISLGMRFRMM CEMEELGTRR YMGTITGISD LDPVRWKNSQ 300 WRSLQVGWDE SAAGERRNRV SIWEIEPLAA PFFICPQPFF GVKRPRQLGT SGISMTKTVN 360 SCSKKMVNFF KSLC

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

LVSLPPVGSL VVYFPQGHSE QVAASMQKDV EAHVPSYPNL PSKLICLLHS VTLQADPDTD  60
EVYAQMTLQP VNTYAKEALQ LSELALRQAR PQMEFFCKTL TASDTSTHGG FSVPRRAAEK  120
IFPSLDFSLQ PPCQELQARD IHDNVWTFRH IFRGQPKRHL LTTGWSLFVS GKKLFAGDSV  180
IFVRDEKQQL LLGIRRANRQ PTNISSSVLS SDSMHIGVLA AAAHASANTS PFTIFYNPRA  240
SPTEFVIPFA KYQKAMYSNQ ISLGMRFRMM CEMEELGTRR YMGTITGISD LDPVRWKNSQ  300
WRSLQVGWDE SAAGERRNRV SIWEIEPLAA PFFICPQPFF GVKRPRQLGT SGISMTKTVN  360
SCSKKMVNFF KSLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.2	1e-178	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG020370.17