PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG020370.16
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1002aa    MW: 111920 Da    PI: 6.8916
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG020370.16genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.52.2e-22100201199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  TRIDC6BG020370.16 100 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--R 188
                        99******************************9999986.*************************************************..5 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++++l+++++r+
  TRIDC6BG020370.16 189 DEKQQLLLGIRRA 201
                        688889****997 PP
2Auxin_resp114.21.2e-37226309183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ e+e+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  TRIDC6BG020370.16 226 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCEMEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 309
                        799********************************989********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    
CAGPLVSLPP VGSLVVYFPQ GHSEQVAASM QKDVEAHVPS YPNLPSKLIC LLHSVTLQAD  60
PDTDEVYAQM TLQPVNTYAK EALQLSELAL RQARPQMEFF CKTLTASDTS THGGFSVPRR  120
AAEKIFPSLD FSLQPPCQEL QARDIHDNVW TFRHIFRGQP KRHLLTTGWS LFVSGKKLFA  180
GDSVIFVRDE KQQLLLGIRR ANRQPTNISS SVLSSDSMHI GVLAAAAHAS ANTSPFTIFY  240
NPRASPTEFV IPFAKYQKAM YSNQISLGMR FRMMCEMEEL GTRRYMGTIT GISDLDPVRW  300
KNSQWRSLQV GWDESAAGER RNRVSIWEIE PLAAPFFICP QPFFGVKRPR QLDDESLEME  360
SLLKRAMPWL GEEVCIKDPQ TQSVTMPGLS LVQWMNMNRQ QSSSLASTAM QSEYYRSASN  420
PAMQNIGAAD LARQLYMQNH LLQQNSMQFN PPKLHQQMKP INDLSNAALP LNQLGAIRNH  480
QDQKQDQQRQ QQSSIQAIPL SQAHPQTNNV QAQVILQNQM QQQQQQKQPP PSPTQNQHGS  540
SGQHLLQSHQ LQDQNLQMQQ QQLLLHQQLQ QQQQQQLNKL PGQLANLASQ QTQLSEQELH  600
LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS  660
SLQTTQLPPP IQQEQQQQKP SQKQVAPTYV SEAAFAQISS TSVIPKTGNT MIVPGAAQSA  720
VTEEIPSCST SPSTANGNHL AQPTIGRNDH CKVSTEKVPH SIAQMSILTP IEAVSVTPVT  780
TKELPKLNNG VKSSAITSKL PNVVSGLQNF MNNALPTDNL ETASSATSLW PSQTDGLLHQ  840
GFATSNFNQH QMFKDELPDV EIQGVDPSNS ALFGMNNDGP LGFPMETEGL LENALDSVKY  900
QNHFSTDDEN NYQMQKDARQ EISTSMVSQS FGQSDMAFNS IDSAINDGAL MNRSSWPPAA  960
PPQRMRTFTK VFLFLLCAYP IESTIFKAVY VVWCLYYQIV VK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.20.0ARF family protein