PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG020370.13
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1049aa    MW: 117354 Da    PI: 6.4452
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG020370.13genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-2250151199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  TRIDC6BG020370.13  50 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--R 138
                        99******************************9999986.*************************************************..5 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                        +++++l+++++r+
  TRIDC6BG020370.13 139 DEKQQLLLGIRRA 151
                        688889****997 PP
2Auxin_resp114.11.3e-37176259183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ e+e+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  TRIDC6BG020370.13 176 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCEMEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 259
                        799********************************989********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    
MSSAQRHFAD PDTDEVYAQM TLQPVNTYAK EALQLSELAL RQARPQMEFF CKTLTASDTS  60
THGGFSVPRR AAEKIFPSLD FSLQPPCQEL QARDIHDNVW TFRHIFRGQP KRHLLTTGWS  120
LFVSGKKLFA GDSVIFVRDE KQQLLLGIRR ANRQPTNISS SVLSSDSMHI GVLAAAAHAS  180
ANTSPFTIFY NPRASPTEFV IPFAKYQKAM YSNQISLGMR FRMMCEMEEL GTRRYMGTIT  240
GISDLDPVRW KNSQWRSLQV GWDESAAGER RNRVSIWEIE PLAAPFFICP QPFFGVKRPR  300
QLDDESLEME SLLKRAMPWL GEEVCIKDPQ TQSVTMPGLS LVQWMNMNRQ QSSSLASTAM  360
QSEYYRSASN PAMQNIGAAD LARQLYMQNH LLQQNSMQFN PPKLHQQMKP INDLSNAALP  420
LNQLGAIRNH QDQKQDQQRQ QQSSIQAIPL SQAHPQTNNV QAQVILQNQM QQQQQQKQPP  480
PSPTQNQHGS SGQHLLQSHQ LQDQNLQMQQ QQLLLHQQLQ QQQQQQLNKL PGQLANLASQ  540
QTQLSEQELH LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ NFLVDMQQQL SNSHSLAQQQ  600
VMPQQDCRTS SLQTTQLPPP IQQEQQQQKP SQKQVAPTYV SEAAFAQISS TSVIPKTGNT  660
MIVPGAAQSA VTEEIPSCST SPSTANGNHL AQPTIGRNDH CKVSTEKVPH SIAQMSILTP  720
IEAVSVTPVT TKELPKLNNG VKSSAITSKL PNVVSGLQNF MNNALPTDNL ETASSATSLW  780
PSQTDGLLHQ GFATSNFNQH QMFKDELPDV EIQGVDPSNS ALFGMNNDGP LGFPMETEGL  840
LENALDSVKY QNHFSTDDEN NYQMQKDARQ EISTSMVSQS FGQSDMAFNS IDSAINDGAL  900
MNRSSWPPAA PPQRMRTFTK VYKRGAVGRS IDIGRFSGYG ELNQALARMF GIEGQLEDRQ  960
RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV KCIRILSPQE VQKMSLDGDL GSNVLPNQAC  1020
SSSDGGNTWK PRYEQNSGNP SIGPYDQFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20730.21e-160ARF family protein