PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG020370.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1143aa MW: 127431 Da PI: 6.793

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG020370.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.2	2.6e-22	144	245	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC6BG020370.12 144 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--R 232 99****************************9999986.*********************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ TRIDC6BG020370.12 233 DEKQQLLLGIRRA 245 688889**997 PP
2	Auxin_resp	114	1.4e-37	270	353	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ e+e+ +rr++Gt++g+sdldpvrW+nS+WrsL+ TRIDC6BG020370.12 270 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCEMEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 353 799******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1143 aa Download sequence
WRSRRRAPPS PRRLLAKLLF LVADAVVGAG ERKAPAINGE LWHACAGPLV SLPPVGSLVV 60 YFPQGHSEQV AASMQKDVEA HVPSYPNLPS KLICLLHSVT LQADPDTDEV YAQMTLQPVN 120 TYAKEALQLS ELALRQARPQ MEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFSLQPP 180 CQELQARDIH DNVWTFRHIF RGQPKRHLLT TGWSLFVSGK KLFAGDSVIF VRDEKQQLLL 240 GIRRANRQPT NISSSVLSSD SMHIGVLAAA AHASANTSPF TIFYNPRASP TEFVIPFAKY 300 QKAMYSNQIS LGMRFRMMCE MEELGTRRYM GTITGISDLD PVRWKNSQWR SLQVGWDESA 360 AGERRNRVSI WEIEPLAAPF FICPQPFFGV KRPRQLDDES LEMESLLKRA MPWLGEEVCI 420 KDPQTQSVTM PGLSLVQWMN MNRQQSSSLA STAMQSEYYR SASNPAMQNI GAADLARQLY 480 MQNHLLQQNS MQFNPPKLHQ QMKPINDLSN AALPLNQLGA IRNHQDQKQD QQRQQQSSIQ 540 AIPLSQAHPQ TNNVQAQVIL QNQMQQQQQQ KQPPPSPTQN QHGSSGQHLL QSHQLQDQNL 600 QMQQQQLLLH QQLQQQQQQQ LNKLPGQLAN LASQQTQLSE QELHLQLLQK LQQQSLMSQS 660 AVTLSRLPII QEQQNFLVDM QQQLSNSHSL AQQQVMPQQD CRTSSLQTTQ LPPPIQQEQQ 720 QQKPSQKQVA PTYVSEAAFA QISSTSVIPK TGNTMIVPGA AQSAVTEEIP SCSTSPSTAN 780 GNHLAQPTIG RNDHCKVSTE KVPHSIAQMS ILTPIEAVSV TPVTTKELPK LNNGVKSSAI 840 TSKLPNVVSG LQNFMNNALP TDNLETASSA TSLWPSQTDG LLHQGFATSN FNQHQMFKDE 900 LPDVEIQGVD PSNSALFGMN NDGPLGFPME TEGLLENALD SVKYQNHFST DDENNYQMQK 960 DARQEISTSM VSQSFGQSDM AFNSIDSAIN DGALMNRSSW PPAAPPQRMR TFTKVYKRGA 1020 VGRSIDIGRF SGYGELNQAL ARMFGIEGQL EDRQRIGWKL VYTDHEDDVL LLGDDPWEEF 1080 VNCVKCIRIL SPQEVQKMSL DGDLGSNVLP NQACSSSDGG NTWKPRYEQN SGNPSIGPYD 1140 QFE

Sequence ? help Back to Top

Protein Sequence Length: 1143 aa Download sequence

WRSRRRAPPS PRRLLAKLLF LVADAVVGAG ERKAPAINGE LWHACAGPLV SLPPVGSLVV  60
YFPQGHSEQV AASMQKDVEA HVPSYPNLPS KLICLLHSVT LQADPDTDEV YAQMTLQPVN  120
TYAKEALQLS ELALRQARPQ MEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFSLQPP  180
CQELQARDIH DNVWTFRHIF RGQPKRHLLT TGWSLFVSGK KLFAGDSVIF VRDEKQQLLL  240
GIRRANRQPT NISSSVLSSD SMHIGVLAAA AHASANTSPF TIFYNPRASP TEFVIPFAKY  300
QKAMYSNQIS LGMRFRMMCE MEELGTRRYM GTITGISDLD PVRWKNSQWR SLQVGWDESA  360
AGERRNRVSI WEIEPLAAPF FICPQPFFGV KRPRQLDDES LEMESLLKRA MPWLGEEVCI  420
KDPQTQSVTM PGLSLVQWMN MNRQQSSSLA STAMQSEYYR SASNPAMQNI GAADLARQLY  480
MQNHLLQQNS MQFNPPKLHQ QMKPINDLSN AALPLNQLGA IRNHQDQKQD QQRQQQSSIQ  540
AIPLSQAHPQ TNNVQAQVIL QNQMQQQQQQ KQPPPSPTQN QHGSSGQHLL QSHQLQDQNL  600
QMQQQQLLLH QQLQQQQQQQ LNKLPGQLAN LASQQTQLSE QELHLQLLQK LQQQSLMSQS  660
AVTLSRLPII QEQQNFLVDM QQQLSNSHSL AQQQVMPQQD CRTSSLQTTQ LPPPIQQEQQ  720
QQKPSQKQVA PTYVSEAAFA QISSTSVIPK TGNTMIVPGA AQSAVTEEIP SCSTSPSTAN  780
GNHLAQPTIG RNDHCKVSTE KVPHSIAQMS ILTPIEAVSV TPVTTKELPK LNNGVKSSAI  840
TSKLPNVVSG LQNFMNNALP TDNLETASSA TSLWPSQTDG LLHQGFATSN FNQHQMFKDE  900
LPDVEIQGVD PSNSALFGMN NDGPLGFPME TEGLLENALD SVKYQNHFST DDENNYQMQK  960
DARQEISTSM VSQSFGQSDM AFNSIDSAIN DGALMNRSSW PPAAPPQRMR TFTKVYKRGA  1020
VGRSIDIGRF SGYGELNQAL ARMFGIEGQL EDRQRIGWKL VYTDHEDDVL LLGDDPWEEF  1080
VNCVKCIRIL SPQEVQKMSL DGDLGSNVLP NQACSSSDGG NTWKPRYEQN SGNPSIGPYD  1140
QFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.2	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG020370.12