PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG020370.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1098aa MW: 122173 Da PI: 6.2837

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG020370.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.5e-22	99	200	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F + TRIDC6BG020370.11 99 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--R 187 99****************************9999986.*********************************************..5 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++++l+++++r+ TRIDC6BG020370.11 188 DEKQQLLLGIRRA 200 688889**997 PP
2	Auxin_resp	114	1.3e-37	225	308	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ e+e+ +rr++Gt++g+sdldpvrW+nS+WrsL+ TRIDC6BG020370.11 225 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCEMEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 308 799******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence
MAQSPASSAV AAPAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQADP 60 DTDEVYAQMT LQPVNTYAKE ALQLSELALR QARPQMEFFC KTLTASDTST HGGFSVPRRA 120 AEKIFPSLDF SLQPPCQELQ ARDIHDNVWT FRHIFRGQPK RHLLTTGWSL FVSGKKLFAG 180 DSVIFVRDEK QQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHASA NTSPFTIFYN 240 PRASPTEFVI PFAKYQKAMY SNQISLGMRF RMMCEMEELG TRRYMGTITG ISDLDPVRWK 300 NSQWRSLQVG WDESAAGERR NRVSIWEIEP LAAPFFICPQ PFFGVKRPRQ LDDESLEMES 360 LLKRAMPWLG EEVCIKDPQT QSVTMPGLSL VQWMNMNRQQ SSSLASTAMQ SEYYRSASNP 420 AMQNIGAADL ARQLYMQNHL LQQNSMQFNP PKLHQQMKPI NDLSNAALPL NQLGAIRNHQ 480 DQKQDQQRQQ QSSIQAIPLS QAHPQTNNVQ AQVILQNQMQ QQQQQKQPPP SPTQNQHGSS 540 GQHLLQSHQL QDQNLQMQQQ QLLLHQQLQQ QQQQQLNKLP GQLANLASQQ TQLSEQELHL 600 QLLQKLQQQS LMSQSAVTLS RLPIIQEQQN FLVDMQQQLS NSHSLAQQQV MPQQDCRTSS 660 LQTTQLPPPI QQEQQQQKPS QKQVAPTYVS EAAFAQISST SVIPKTGNTM IVPGAAQSAV 720 TEEIPSCSTS PSTANGNHLA QPTIGRNDHC KVSTEKVPHS IAQMSILTPI EAVSVTPVTT 780 KELPKLNNGV KSSAITSKLP NVVSGLQNFM NNALPTDNLE TASSATSLWP SQTDGLLHQG 840 FATSNFNQHQ MFKDELPDVE IQGVDPSNSA LFGMNNDGPL GFPMETEGLL ENALDSVKYQ 900 NHFSTDDENN YQMQKDARQE ISTSMVSQSF GQSDMAFNSI DSAINDGALM NRSSWPPAAP 960 PQRMRTFTKV YKRGAVGRSI DIGRFSGYGE LNQALARMFG IEGQLEDRQR IGWKLVYTDH 1020 EDDVLLLGDD PWEEFVNCVK CIRILSPQEV QKMSLDGDLG SNVLPNQACS SSDGGNTWKP 1080 RYEQNSGNPS IGPYDQFE

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence

MAQSPASSAV AAPAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQADP  60
DTDEVYAQMT LQPVNTYAKE ALQLSELALR QARPQMEFFC KTLTASDTST HGGFSVPRRA  120
AEKIFPSLDF SLQPPCQELQ ARDIHDNVWT FRHIFRGQPK RHLLTTGWSL FVSGKKLFAG  180
DSVIFVRDEK QQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHASA NTSPFTIFYN  240
PRASPTEFVI PFAKYQKAMY SNQISLGMRF RMMCEMEELG TRRYMGTITG ISDLDPVRWK  300
NSQWRSLQVG WDESAAGERR NRVSIWEIEP LAAPFFICPQ PFFGVKRPRQ LDDESLEMES  360
LLKRAMPWLG EEVCIKDPQT QSVTMPGLSL VQWMNMNRQQ SSSLASTAMQ SEYYRSASNP  420
AMQNIGAADL ARQLYMQNHL LQQNSMQFNP PKLHQQMKPI NDLSNAALPL NQLGAIRNHQ  480
DQKQDQQRQQ QSSIQAIPLS QAHPQTNNVQ AQVILQNQMQ QQQQQKQPPP SPTQNQHGSS  540
GQHLLQSHQL QDQNLQMQQQ QLLLHQQLQQ QQQQQLNKLP GQLANLASQQ TQLSEQELHL  600
QLLQKLQQQS LMSQSAVTLS RLPIIQEQQN FLVDMQQQLS NSHSLAQQQV MPQQDCRTSS  660
LQTTQLPPPI QQEQQQQKPS QKQVAPTYVS EAAFAQISST SVIPKTGNTM IVPGAAQSAV  720
TEEIPSCSTS PSTANGNHLA QPTIGRNDHC KVSTEKVPHS IAQMSILTPI EAVSVTPVTT  780
KELPKLNNGV KSSAITSKLP NVVSGLQNFM NNALPTDNLE TASSATSLWP SQTDGLLHQG  840
FATSNFNQHQ MFKDELPDVE IQGVDPSNSA LFGMNNDGPL GFPMETEGLL ENALDSVKYQ  900
NHFSTDDENN YQMQKDARQE ISTSMVSQSF GQSDMAFNSI DSAINDGALM NRSSWPPAAP  960
PQRMRTFTKV YKRGAVGRSI DIGRFSGYGE LNQALARMFG IEGQLEDRQR IGWKLVYTDH  1020
EDDVLLLGDD PWEEFVNCVK CIRILSPQEV QKMSLDGDLG SNVLPNQACS SSDGGNTWKP  1080
RYEQNSGNPS IGPYDQFE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.2	1e-168	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG020370.11