PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6BG019820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 473aa    MW: 51172.2 Da    PI: 9.5307
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6BG019820.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.47.7e-42185261278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       CqvegC+adls++k+yhr+h+vCe hskap+v+v+gle+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+
  TRIDC6BG019820.1 185 CQVEGCKADLSSVKDYHRKHRVCELHSKAPKVVVAGLERRFCQQCSRFHALAEFDQKKRSCRRRLNDHNSRRRKPQP 261
                       **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MGSFGMEWNQ RSSVLWDWEN FPPIGNNPKN AMQADPRFAG VAATMGNEPL HSSGGSGTFS  60
SSSEMGYGSS KSSMSASIDS SSRAGNNMEF RFAPVKNPDR NTSKNPELGK VDNTRTGTSP  120
SSVVAVSSGE PVIGLKLGKR TYFEDVCGGQ SVKSLPSGAA SAPNKSPALG KKAKAEQQKP  180
HNSYCQVEGC KADLSSVKDY HRKHRVCELH SKAPKVVVAG LERRFCQQCS RFHALAEFDQ  240
KKRSCRRRLN DHNSRRRKPQ PEAISFSSSR MSTMFYDARQ QPNFLFGQAP YVQMRSCGSS  300
SWDDPGGFKV THTKAPWLKP TTAAGVHGMH LSSQQMSDNI MPHGAHHGFD GFMAFKGTCI  360
KFPNQGVQAS AVASDSSGAP DLQHALSLLS SNPVGAANLQ PSPQMHSGVA AIAGAPNPAM  420
HVLGSSTGLW LDGGQPLDDH PRFQVFERLG DHDSELQLPK PSYDHASHFD RMH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241258KKRSCRRRLNDHNSRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.17e-45SBP family protein