PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG051060.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 624aa MW: 70415.3 Da PI: 8.8266 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.6e-06 | 309 | 328 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f + G C++G++C++ H+ TRIDC6AG051060.4 309 CHEFVK-GRCSRGASCRYVHD 328 9*****.*************7 PP | |||||||
2 | zf-CCCH | 24.7 | 4e-08 | 365 | 386 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ff++ G C++G++C++ H TRIDC6AG051060.4 365 KRPCKFFSE-GRCRRGETCPYLH 386 689******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence |
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN 60 LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEGHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDE WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GAWNRSRRNR 180 SGSRSRSRER VRGRSRSRSR SPYFDRGSDW RAERGRISGG PSLLCRDFTA GRCRRGLHCR 240 IPHEDGGRRQ FDEPYPADSR ERYGHQNKDF MDPREPDDYV RSRQPRGHFD EGTWERSEPR 300 RDYRSSDQCH EFVKGRCSRG ASCRYVHDES ASHAGWRDDA RETAHVRGGP DSSFGNRTEH 360 RREQKRPCKF FSEGRCRRGE TCPYLHEEAP QSQMAPGASD EPPKYSGGRT PRGNYSNWGE 420 ETNATHAGSH ILSRDDRENP GSQHTARSDT GYGYKNRQLE DAGRDQYQII PQEDFCSQGR 480 NKPEMSASKQ PQFLSPIQTS ADSMNNDKVS DMDGLSASAT TGNLNMQTGI NAANLLGGQS 540 LSQIAQSQDA VPQTSTAPIH PVTSQQQDGT SMFPFNIQQH ESNFSLHPNR QDQFSNFSLH 600 PDSRSLYGTR PTQLHSRFTG IACI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 194 | RSRSRERVRGR |
2 | 186 | 196 | RSRSRERVRGR |
3 | 188 | 198 | RSRSRERVRGR |
4 | 190 | 200 | RSRSRERVRGR |
5 | 192 | 200 | RGRSRSRSR |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG051060.4 |