PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG044660.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 433aa MW: 46912.4 Da PI: 7.2028

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG044660.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.1	1.8e-08	22	63	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ TRIDC6AG044660.5 22 ARACDGCMRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 63 578*****************************6567777776 PP
2	CCT	66.9	5.5e-23	377	419	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ TRIDC6AG044660.5 377 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 419 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
AAAAMGGSDQ KAAGGAVGGK AARACDGCMR RRARWYCAAD DAFLCQGCDT SVHSANPLAR 60 RHERLRLCAT SPLPAERGKA VKESSGATTS KCLDVAPAWP RRKARTRRPP VKSVGQLLSR 120 RLVVPEVGAG ESSTSDERRA PEEEQLLYRV PVFDPALAEF CSPPPIDGSR HSEDVEGAVE 180 DAKELTAEQS PVQELPDCFA SFGPTDADLR EFAADMEALL GQGLDDGKEL EDSFYMEAPG 240 LISPPGEHGG RVKVEADGGL VSRSNGVLAS GHDLKREFNG SPPTLVDDDD SFEHKTSSAS 300 NGDGVDDAQF LKRSLDLRLN YEAVMESWGS SPWTDGRRPP GQLDDLLLHD HGTWTAGGGG 360 RHGDAAWPPR PRTDEWREAR VSRYREKRRT RLFAKKIRYE VRKLNAEKRP RMKGRFVKRT 420 GAAAAAGAPC AVT

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

AAAAMGGSDQ KAAGGAVGGK AARACDGCMR RRARWYCAAD DAFLCQGCDT SVHSANPLAR  60
RHERLRLCAT SPLPAERGKA VKESSGATTS KCLDVAPAWP RRKARTRRPP VKSVGQLLSR  120
RLVVPEVGAG ESSTSDERRA PEEEQLLYRV PVFDPALAEF CSPPPIDGSR HSEDVEGAVE  180
DAKELTAEQS PVQELPDCFA SFGPTDADLR EFAADMEALL GQGLDDGKEL EDSFYMEAPG  240
LISPPGEHGG RVKVEADGGL VSRSNGVLAS GHDLKREFNG SPPTLVDDDD SFEHKTSSAS  300
NGDGVDDAQF LKRSLDLRLN YEAVMESWGS SPWTDGRRPP GQLDDLLLHD HGTWTAGGGG  360
RHGDAAWPPR PRTDEWREAR VSRYREKRRT RLFAKKIRYE VRKLNAEKRP RMKGRFVKRT  420
GAAAAAGAPC AVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	106	PRRKART
2	388	404	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	9e-68	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG044660.5