PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG044660.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 432aa MW: 46935.4 Da PI: 7.2403

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG044660.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.1	1.8e-08	18	59	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ TRIDC6AG044660.3 18 ARACDGCMRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 59 578*****************************6567777776 PP
2	CCT	66.9	5.5e-23	376	418	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ TRIDC6AG044660.3 376 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 418 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MGGSDQKAAG GAVGGKAARA CDGCMRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER 60 LRLCATSPLP AERGKAVKES SGATTSKCLD VAPAWPRRKA RTRRPPVKSV GQLLSRRLVV 120 PEVGAGESST SDERRAPEEE QLLYRVPVFD PALAEFCSPP PIDGSRHSED VEGAVEDAKE 180 LTAEQSPVQE LPDCFASFGP TDADLREFAA DMEALLGQGL DDGKELEDSF YMEAPGLISP 240 PGEHGGRVKV EADGGLVSRS NGVLASGHDL KREFNGSPPT LVDDDDSFEH KTSSASNGDG 300 VDDAQFLKRS LDLRLNYEAV MESWGSSPWT DGRRPPGQLD DLLLHDHAVH GTWTAGGGGR 360 HGDAAWPPRP RTDEWREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRTG 420 AAAAAGAPCA VT

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MGGSDQKAAG GAVGGKAARA CDGCMRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
LRLCATSPLP AERGKAVKES SGATTSKCLD VAPAWPRRKA RTRRPPVKSV GQLLSRRLVV  120
PEVGAGESST SDERRAPEEE QLLYRVPVFD PALAEFCSPP PIDGSRHSED VEGAVEDAKE  180
LTAEQSPVQE LPDCFASFGP TDADLREFAA DMEALLGQGL DDGKELEDSF YMEAPGLISP  240
PGEHGGRVKV EADGGLVSRS NGVLASGHDL KREFNGSPPT LVDDDDSFEH KTSSASNGDG  300
VDDAQFLKRS LDLRLNYEAV MESWGSSPWT DGRRPPGQLD DLLLHDHAVH GTWTAGGGGR  360
HGDAAWPPRP RTDEWREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRTG  420
AAAAAGAPCA VT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	102	PRRKART
2	387	403	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-67	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG044660.3