PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG044660.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 420aa MW: 45511.9 Da PI: 6.9764

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG044660.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.1	1.8e-08	23	64	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ TRIDC6AG044660.2 23 ARACDGCMRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 64 578*****************************6567777776 PP
2	CCT	67	5.3e-23	364	406	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ TRIDC6AG044660.2 364 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 406 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
VAAAAMGGSD QKAAGGAVGG KAARACDGCM RRRARWYCAA DDAFLCQGCD TSVHSANPLA 60 RRHERLRLCA TSPLPAERGK AVKESSGATT SKCLDVAPAW PRRKARTRRP PVKSVGQLLS 120 RRLVVPEVGA GESSTSDERR APEEEQLLYR VPVFDPALAE FCSPPPIDGS RHSEDVEGAV 180 EDAKELTAEQ SPVQELPDCF ASFGPTDADL REFAADMEAL LGQGLDDGKE LEDSFYMEAP 240 GLISPPGEHG GRVKVEADGG LFNGSPPTLV DDDDSFEHKT SSASNGDGVD DAQFLKRSLD 300 LRLNYEAVME SWGSSPWTDG RRPPGQLDDL LLHDHAVHGT WTAGGGGRHG DAAWPPRPRT 360 DEWREARVSR YREKRRTRLF AKKIRYEVRK LNAEKRPRMK GRFVKRTGAA AAAGAPCAVT

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

VAAAAMGGSD QKAAGGAVGG KAARACDGCM RRRARWYCAA DDAFLCQGCD TSVHSANPLA  60
RRHERLRLCA TSPLPAERGK AVKESSGATT SKCLDVAPAW PRRKARTRRP PVKSVGQLLS  120
RRLVVPEVGA GESSTSDERR APEEEQLLYR VPVFDPALAE FCSPPPIDGS RHSEDVEGAV  180
EDAKELTAEQ SPVQELPDCF ASFGPTDADL REFAADMEAL LGQGLDDGKE LEDSFYMEAP  240
GLISPPGEHG GRVKVEADGG LFNGSPPTLV DDDDSFEHKT SSASNGDGVD DAQFLKRSLD  300
LRLNYEAVME SWGSSPWTDG RRPPGQLDDL LLHDHAVHGT WTAGGGGRHG DAAWPPRPRT  360
DEWREARVSR YREKRRTRLF AKKIRYEVRK LNAEKRPRMK GRFVKRTGAA AAAGAPCAVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	107	PRRKART
2	375	391	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	4e-66	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG044660.2