PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043790.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 390aa MW: 42752.6 Da PI: 4.6966

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043790.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.6	9.1e-07	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e++ +++C+++ lC +C + H+ TRIDC6AG043790.3 4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35 6***************************9954 PP
2	zf-B_box	23.5	1.2e-07	47	78	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+++ ++++ C + ++ lC++C ++H TRIDC6AG043790.3 47 LCDRCASQPAAVRCLEENTSLCQNCDWSGHAA 78 7*****************************55 PP
3	CCT	62.1	1.8e-21	333	376	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ TRIDC6AG043790.3 333 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 376 6789*************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANTLSQ RHMRTLLCDR CASQPAAVRC 60 LEENTSLCQN CDWSGHAATS MAAGHLRQTI NCYSGCPSSE VLARIWSFDF DAPSAAAEPN 120 CEEGISMMSI NDSGVSNHCG VQQDCSLLDI ANSSLMSDPP TSEKLKSEDE MNLQPLPTHQ 180 PAQSVSMAPK VPSVTDDDMF NDGRIYENFC VDDNDLTFEN YEELFGTPHV QTEQLFDDAG 240 IDSFFELKEM PAADCDQQLN PMRPKCSNAV SADSSLCVPA RQAISTISLS FSGLTGESNA 300 GDHQDCEVSP LLLMGEQPWL PPGSEGSSAG GSRGSALSRY MEKKKRRKFD KKIRYASRKA 360 RADVRKRVKG RFVKAGEAYD YDPLSDTRSY

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANTLSQ RHMRTLLCDR CASQPAAVRC  60
LEENTSLCQN CDWSGHAATS MAAGHLRQTI NCYSGCPSSE VLARIWSFDF DAPSAAAEPN  120
CEEGISMMSI NDSGVSNHCG VQQDCSLLDI ANSSLMSDPP TSEKLKSEDE MNLQPLPTHQ  180
PAQSVSMAPK VPSVTDDDMF NDGRIYENFC VDDNDLTFEN YEELFGTPHV QTEQLFDDAG  240
IDSFFELKEM PAADCDQQLN PMRPKCSNAV SADSSLCVPA RQAISTISLS FSGLTGESNA  300
GDHQDCEVSP LLLMGEQPWL PPGSEGSSAG GSRGSALSRY MEKKKRRKFD KKIRYASRKA  360
RADVRKRVKG RFVKAGEAYD YDPLSDTRSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	347	KKKRR
2	343	348	KKKRRK
3	343	369	KKKRRKFDKKIRYASRKARADVRKRVK
4	344	370	KKKRRKFDKKIRYASRKARADVRKRVK
5	344	348	KKRRK
6	345	371	KKKRRKFDKKIRYASRKARADVRKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	8e-92	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043790.3