PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 355aa MW: 39599.7 Da PI: 6.9423

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	32	51	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.9 32 CT-FYQNGVCSYGSRCRYEHV 51 66.6666***********997 PP
2	zf-CCCH	23.9	7.4e-08	136	157	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.9 136 PICS-FAAAGTCPYGKECPQMHG 157 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
RSICKFFVNG ACFKGDYCQF SHDWNDQPND VCTFYQNGVC SYGSRCRYEH VEVSSEYTQP 60 STTAALAPSN SYLSWCPLCE GEIDVSNQTH KSLSVCSVHQ STWRFDDEDC IPEDGNSLSS 120 ALTAQNQALH PLAHLPICSF AAAGTCPYGK ECPQMHGDPC TTCGKQCLHP YRPSEGGAHI 180 KLCKRNNKRL ETLKKSEEME CSVCLDRVLS KPTAAEKRFG LLPECDHAFC ITCIRKWRSS 240 SLTSSMDIDS TVKACPICRK VSYYVIPSAT WYSSKEEKQD IIDGYKAKLK SIDCRYFDFG 300 RDTCPFGGRC FYKHAYTDGR LEEPATVAVL HFHADNGSIE HARNIGLVLS IGGLL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

RSICKFFVNG ACFKGDYCQF SHDWNDQPND VCTFYQNGVC SYGSRCRYEH VEVSSEYTQP  60
STTAALAPSN SYLSWCPLCE GEIDVSNQTH KSLSVCSVHQ STWRFDDEDC IPEDGNSLSS  120
ALTAQNQALH PLAHLPICSF AAAGTCPYGK ECPQMHGDPC TTCGKQCLHP YRPSEGGAHI  180
KLCKRNNKRL ETLKKSEEME CSVCLDRVLS KPTAAEKRFG LLPECDHAFC ITCIRKWRSS  240
SLTSSMDIDS TVKACPICRK VSYYVIPSAT WYSSKEEKQD IIDGYKAKLK SIDCRYFDFG  300
RDTCPFGGRC FYKHAYTDGR LEEPATVAVL HFHADNGSIE HARNIGLVLS IGGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-115	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.9