PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 376aa MW: 42199.6 Da PI: 7.7012

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	52	71	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.8 52 CT-FYQNGVCSYGSRCRYEHV 71 66.6666***********997 PP
2	zf-CCCH	23.8	7.9e-08	156	177	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.8 156 PICS-FAAAGTCPYGKECPQMHG 177 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
RQRGSARFRR AWPGQAAMSN RSICKFFVNG ACFKGDYCQF SHDWNDQPND VCTFYQNGVC 60 SYGSRCRYEH VEVSSEYTQP STTAALAPSN SYLSWCPLCE GEIDVSNQTH KSLSVCSVHQ 120 STWRFDDEDC IPEDGNSLSS ALTAQNQALH PLAHLPICSF AAAGTCPYGK ECPQMHGDPC 180 TTCGKQCLHP YRPSEGGAHI KLCKRNNKRL ETLKKSEEME CSVCLDRVLS KPTAAEKRFG 240 LLPECDHAFC ITCIRKWRSS SLTSSMDIDS TVKACPICRK VSYYVIPSAT WYSSKEEKQD 300 IIDGYKAKLK SIDCRYFDFG RDTCPFGGRC FYKHAYTDGR LEEPATVAVL HFHADNGSIE 360 HARNIGLAYL LSRLHL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

RQRGSARFRR AWPGQAAMSN RSICKFFVNG ACFKGDYCQF SHDWNDQPND VCTFYQNGVC  60
SYGSRCRYEH VEVSSEYTQP STTAALAPSN SYLSWCPLCE GEIDVSNQTH KSLSVCSVHQ  120
STWRFDDEDC IPEDGNSLSS ALTAQNQALH PLAHLPICSF AAAGTCPYGK ECPQMHGDPC  180
TTCGKQCLHP YRPSEGGAHI KLCKRNNKRL ETLKKSEEME CSVCLDRVLS KPTAAEKRFG  240
LLPECDHAFC ITCIRKWRSS SLTSSMDIDS TVKACPICRK VSYYVIPSAT WYSSKEEKQD  300
IIDGYKAKLK SIDCRYFDFG RDTCPFGGRC FYKHAYTDGR LEEPATVAVL HFHADNGSIE  360
HARNIGLAYL LSRLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.8