PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG043080.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 375aa MW: 41885.3 Da PI: 7.585 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 52 | 71 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.7 52 CT-FYQNGVCSYGSRCRYEHV 71 66.6666***********997 PP | |||||||
2 | zf-CCCH | 23.8 | 7.9e-08 | 156 | 177 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.7 156 PICS-FAAAGTCPYGKECPQMHG 177 5788.*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence |
RQRGSARFRR AWPGQAAMSN RSICKFFVNG ACFKGDYCQF SHDWNDQPND VCTFYQNGVC 60 SYGSRCRYEH VEVSSEYTQP STTAALAPSN SYLSWCPLCE GEIDVSNQTH KSLSVCSVHQ 120 STWRFDDEDC IPEDGNSLSS ALTAQNQALH PLAHLPICSF AAAGTCPYGK ECPQMHGDPC 180 TTCGKQCLHP YRPSEGGAHI KLCKRNNKRL ETLKKSEEME CSVCLDRVLS KPTAAEKRFG 240 LLPECDHAFC ITCIRKWRSS SLTSSMDIDS TVKACPICRK VSYYVIPSAT WYSSKEEKQD 300 IIDGYKAKLK SIDCRYFDFG RDTCPFGGRC FYKHAYTDGR LEEPATVAVL HFHADNGSIE 360 HARNIGLVLS IGGLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-117 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG043080.7 |