PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 364aa MW: 40775.2 Da PI: 7.0904

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.3e-07	40	59	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.5 40 CT-FYQNGVCSYGSRCRYEHV 59 66.6666***********997 PP
2	zf-CCCH	23.8	7.6e-08	144	165	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.5 144 PICS-FAAAGTCPYGKECPQMHG 165 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
CLLLSMSIRS ICKFFVNGAC FKGDYCQFSH DWNDQPNDVC TFYQNGVCSY GSRCRYEHVE 60 VSSEYTQPST TAALAPSNSY LSWCPLCEGE IDVSNQTHKS LSVCSVHQST WRFDDEDCIP 120 EDGNSLSSAL TAQNQALHPL AHLPICSFAA AGTCPYGKEC PQMHGDPCTT CGKQCLHPYR 180 PSEGGAHIKL CKRNNKRLET LKKSEEMECS VCLDRVLSKP TAAEKRFGLL PECDHAFCIT 240 CIRKWRSSSL TSSMDIDSTV KACPICRKVS YYVIPSATWY SSKEEKQDII DGYKAKLKSI 300 DCRYFDFGRD TCPFGGRCFY KHAYTDGRLE EPATVAVLHF HADNGSIEHA RNIGLAYLLS 360 RLHL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

CLLLSMSIRS ICKFFVNGAC FKGDYCQFSH DWNDQPNDVC TFYQNGVCSY GSRCRYEHVE  60
VSSEYTQPST TAALAPSNSY LSWCPLCEGE IDVSNQTHKS LSVCSVHQST WRFDDEDCIP  120
EDGNSLSSAL TAQNQALHPL AHLPICSFAA AGTCPYGKEC PQMHGDPCTT CGKQCLHPYR  180
PSEGGAHIKL CKRNNKRLET LKKSEEMECS VCLDRVLSKP TAAEKRFGLL PECDHAFCIT  240
CIRKWRSSSL TSSMDIDSTV KACPICRKVS YYVIPSATWY SSKEEKQDII DGYKAKLKSI  300
DCRYFDFGRD TCPFGGRCFY KHAYTDGRLE EPATVAVLHF HADNGSIEHA RNIGLAYLLS  360
RLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.5