PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 369aa MW: 41229.6 Da PI: 7.334

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	46	65	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.4 46 CT-FYQNGVCSYGSRCRYEHV 65 66.6666***********997 PP
2	zf-CCCH	23.8	7.8e-08	150	171	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.4 150 PICS-FAAAGTCPYGKECPQMHG 171 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
RFRRAWPGQA AMSNRSICKF FVNGACFKGD YCQFSHDWND QPNDVCTFYQ NGVCSYGSRC 60 RYEHVEVSSE YTQPSTTAAL APSNSYLSWC PLCEGEIDVS NQTHKSLSVC SVHQSTWRFD 120 DEDCIPEDGN SLSSALTAQN QALHPLAHLP ICSFAAAGTC PYGKECPQMH GDPCTTCGKQ 180 CLHPYRPSEG GAHIKLCKRN NKRLETLKKS EEMECSVCLD RVLSKPTAAE KRFGLLPECD 240 HAFCITCIRK WRSSSLTSSM DIDSTVKACP ICRKVSYYVI PSATWYSSKE EKQDIIDGYK 300 AKLKSIDCRY FDFGRDTCPF GGRCFYKHAY TDGRLEEPAT VAVLHFHADN GSIEHARNIG 360 LVLSIGGLL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

RFRRAWPGQA AMSNRSICKF FVNGACFKGD YCQFSHDWND QPNDVCTFYQ NGVCSYGSRC  60
RYEHVEVSSE YTQPSTTAAL APSNSYLSWC PLCEGEIDVS NQTHKSLSVC SVHQSTWRFD  120
DEDCIPEDGN SLSSALTAQN QALHPLAHLP ICSFAAAGTC PYGKECPQMH GDPCTTCGKQ  180
CLHPYRPSEG GAHIKLCKRN NKRLETLKKS EEMECSVCLD RVLSKPTAAE KRFGLLPECD  240
HAFCITCIRK WRSSSLTSSM DIDSTVKACP ICRKVSYYVI PSATWYSSKE EKQDIIDGYK  300
AKLKSIDCRY FDFGRDTCPF GGRCFYKHAY TDGRLEEPAT VAVLHFHADN GSIEHARNIG  360
LVLSIGGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-117	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.4