PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG043080.25
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 287aa    MW: 32060.2 Da    PI: 6.9445
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG043080.25genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.51e-072948626
                       -SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                       C  f+++G C+yG+rC++ H+
  TRIDC6AG043080.25 29 CT-FYQNGVCSYGSRCRYEHV 48
                       66.6666***********997 PP
2zf-CCCH24.25.7e-08133154426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C+ fa+ GtC+yG  C+ +Hg
  TRIDC6AG043080.25 133 PICS-FAAAGTCPYGKECPQMHG 154
                        5788.*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
CKFFVNGACF KGDYCQFSHD WNDQPNDVCT FYQNGVCSYG SRCRYEHVEV SSEYTQPSTT  60
AALAPSNSYL SWCPLCEGEI DVSNQTHKSL SVCSVHQSTW RFDDEDCIPE DGNSLSSALT  120
AQNQALHPLA HLPICSFAAA GTCPYGKECP QMHGDPCTTC GKQCLHPYRP SEGGAHIKLC  180
KRNNKRLETL KKSEEMECSV CLDRVLSKPT AAEKRFGLLP ECDHAFCITC IRKWRSSSLT  240
SSMDIDSTVK ACPICRKVSY YVIPSATWYS SKEEKQDIID GYKAKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.13e-92C3H family protein