PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.22

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 327aa MW: 36643.3 Da PI: 7.2763

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.22	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	39	58	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.22 39 CT-FYQNGVCSYGSRCRYEHV 58 66.6666***********997 PP
2	zf-CCCH	24	6.7e-08	143	164	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.22 143 PICS-FAAAGTCPYGKECPQMHG 164 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
QAAMSNSRSI CKFFVNGACF KGDYCQFSHD WNDQPNDVCT FYQNGVCSYG SRCRYEHVEV 60 SSEYTQPSTT AALAPSNSYL SWCPLCEGEI DVSNQTHKSL SVCSVHQSTW RFDDEDCIPE 120 DGNSLSSALT AQNQALHPLA HLPICSFAAA GTCPYGKECP QMHGDPCTTC GKQCLHPYRP 180 SEGGAHIKLC KRNNKRLETL KKSEEMECSV CLDRVLSKPT AAEKRFGLLP ECDHAFCITC 240 IRKWRSSSLT SSMDIDSTVK ACPICRKVSY YVIPSATWYS SKEEKQDIID GYKAKLKSID 300 CRYFDFGRDT CPFGGRCFYK HAYTDGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-111	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.22