PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG043080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 369aa MW: 41229.6 Da PI: 7.334 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 46 | 65 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.2 46 CT-FYQNGVCSYGSRCRYEHV 65 66.6666***********997 PP | |||||||
2 | zf-CCCH | 23.8 | 7.8e-08 | 150 | 171 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.2 150 PICS-FAAAGTCPYGKECPQMHG 171 5788.*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence |
RFRRAWPGQA AMSNRSICKF FVNGACFKGD YCQFSHDWND QPNDVCTFYQ NGVCSYGSRC 60 RYEHVEVSSE YTQPSTTAAL APSNSYLSWC PLCEGEIDVS NQTHKSLSVC SVHQSTWRFD 120 DEDCIPEDGN SLSSALTAQN QALHPLAHLP ICSFAAAGTC PYGKECPQMH GDPCTTCGKQ 180 CLHPYRPSEG GAHIKLCKRN NKRLETLKKS EEMECSVCLD RVLSKPTAAE KRFGLLPECD 240 HAFCITCIRK WRSSSLTSSM DIDSTVKACP ICRKVSYYVI PSATWYSSKE EKQDIIDGYK 300 AKLKSIDCRY FDFGRDTCPF GGRCFYKHAY TDGRLEEPAT VAVLHFHADN GSIEHARNIG 360 LVLSIGGLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-117 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG043080.2 |