PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.16

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 373aa MW: 41759.1 Da PI: 7.4754

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.16	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	49	68	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.16 49 CT-FYQNGVCSYGSRCRYEHV 68 66.6666***********997 PP
2	zf-CCCH	23.8	7.9e-08	153	174	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.16 153 PICS-FAAAGTCPYGKECPQMHG 174 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
GSARFRRAWP GQAAMSNRSI CKFFVNGACF KGDYCQFSHD WNDQPNDVCT FYQNGVCSYG 60 SRCRYEHVEV SSEYTQPSTT AALAPSNSYL SWCPLCEGEI DVSNQTHKSL SVCSVHQSTW 120 RFDDEDCIPE DGNSLSSALT AQNQALHPLA HLPICSFAAA GTCPYGKECP QMHGDPCTTC 180 GKQCLHPYRP SEGGAHIKLC KRNNKRLETL KKSEEMECSV CLDRVLSKPT AAEKRFGLLP 240 ECDHAFCITC IRKWRSSSLT SSMDIDSTVK ACPICRKVSY YVIPSATWYS SKEEKQDIID 300 GYKAKLKSID CRYFDFGRDT CPFGGRCFYK HAYTDGRLEE PATVAVLHFH ADNGSIEHAR 360 NIGLAYLLSR LHL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

GSARFRRAWP GQAAMSNRSI CKFFVNGACF KGDYCQFSHD WNDQPNDVCT FYQNGVCSYG  60
SRCRYEHVEV SSEYTQPSTT AALAPSNSYL SWCPLCEGEI DVSNQTHKSL SVCSVHQSTW  120
RFDDEDCIPE DGNSLSSALT AQNQALHPLA HLPICSFAAA GTCPYGKECP QMHGDPCTTC  180
GKQCLHPYRP SEGGAHIKLC KRNNKRLETL KKSEEMECSV CLDRVLSKPT AAEKRFGLLP  240
ECDHAFCITC IRKWRSSSLT SSMDIDSTVK ACPICRKVSY YVIPSATWYS SKEEKQDIID  300
GYKAKLKSID CRYFDFGRDT CPFGGRCFYK HAYTDGRLEE PATVAVLHFH ADNGSIEHAR  360
NIGLAYLLSR LHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.16