PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.15

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 371aa MW: 41387.7 Da PI: 7.334

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.15	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	48	67	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.15 48 CT-FYQNGVCSYGSRCRYEHV 67 66.6666***********997 PP
2	zf-CCCH	23.8	7.8e-08	152	173	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.15 152 PICS-FAAAGTCPYGKECPQMHG 173 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
SARFRRAWPG QAAMSNRSIC KFFVNGACFK GDYCQFSHDW NDQPNDVCTF YQNGVCSYGS 60 RCRYEHVEVS SEYTQPSTTA ALAPSNSYLS WCPLCEGEID VSNQTHKSLS VCSVHQSTWR 120 FDDEDCIPED GNSLSSALTA QNQALHPLAH LPICSFAAAG TCPYGKECPQ MHGDPCTTCG 180 KQCLHPYRPS EGGAHIKLCK RNNKRLETLK KSEEMECSVC LDRVLSKPTA AEKRFGLLPE 240 CDHAFCITCI RKWRSSSLTS SMDIDSTVKA CPICRKVSYY VIPSATWYSS KEEKQDIIDG 300 YKAKLKSIDC RYFDFGRDTC PFGGRCFYKH AYTDGRLEEP ATVAVLHFHA DNGSIEHARN 360 IGLVLSIGGL L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

SARFRRAWPG QAAMSNRSIC KFFVNGACFK GDYCQFSHDW NDQPNDVCTF YQNGVCSYGS  60
RCRYEHVEVS SEYTQPSTTA ALAPSNSYLS WCPLCEGEID VSNQTHKSLS VCSVHQSTWR  120
FDDEDCIPED GNSLSSALTA QNQALHPLAH LPICSFAAAG TCPYGKECPQ MHGDPCTTCG  180
KQCLHPYRPS EGGAHIKLCK RNNKRLETLK KSEEMECSVC LDRVLSKPTA AEKRFGLLPE  240
CDHAFCITCI RKWRSSSLTS SMDIDSTVKA CPICRKVSYY VIPSATWYSS KEEKQDIIDG  300
YKAKLKSIDC RYFDFGRDTC PFGGRCFYKH AYTDGRLEEP ATVAVLHFHA DNGSIEHARN  360
IGLVLSIGGL L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-117	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.15