PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.13

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 367aa MW: 41084.4 Da PI: 7.2216

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.13	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	43	62	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.13 43 CT-FYQNGVCSYGSRCRYEHV 62 66.6666***********997 PP
2	zf-CCCH	23.8	7.7e-08	147	168	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.13 147 PICS-FAAAGTCPYGKECPQMHG 168 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
RAWPGQAAMS NRSICKFFVN GACFKGDYCQ FSHDWNDQPN DVCTFYQNGV CSYGSRCRYE 60 HVEVSSEYTQ PSTTAALAPS NSYLSWCPLC EGEIDVSNQT HKSLSVCSVH QSTWRFDDED 120 CIPEDGNSLS SALTAQNQAL HPLAHLPICS FAAAGTCPYG KECPQMHGDP CTTCGKQCLH 180 PYRPSEGGAH IKLCKRNNKR LETLKKSEEM ECSVCLDRVL SKPTAAEKRF GLLPECDHAF 240 CITCIRKWRS SSLTSSMDID STVKACPICR KVSYYVIPSA TWYSSKEEKQ DIIDGYKAKL 300 KSIDCRYFDF GRDTCPFGGR CFYKHAYTDG RLEEPATVAV LHFHADNGSI EHARNIGLAY 360 LLSRLHL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

RAWPGQAAMS NRSICKFFVN GACFKGDYCQ FSHDWNDQPN DVCTFYQNGV CSYGSRCRYE  60
HVEVSSEYTQ PSTTAALAPS NSYLSWCPLC EGEIDVSNQT HKSLSVCSVH QSTWRFDDED  120
CIPEDGNSLS SALTAQNQAL HPLAHLPICS FAAAGTCPYG KECPQMHGDP CTTCGKQCLH  180
PYRPSEGGAH IKLCKRNNKR LETLKKSEEM ECSVCLDRVL SKPTAAEKRF GLLPECDHAF  240
CITCIRKWRS SSLTSSMDID STVKACPICR KVSYYVIPSA TWYSSKEEKQ DIIDGYKAKL  300
KSIDCRYFDF GRDTCPFGGR CFYKHAYTDG RLEEPATVAV LHFHADNGSI EHARNIGLAY  360
LLSRLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.13