PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 358aa MW: 39931.1 Da PI: 6.9423

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	35	54	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++G C+yG+rC++ H+ TRIDC6AG043080.12 35 CT-FYQNGVCSYGSRCRYEHV 54 66.6666***********997 PP
2	zf-CCCH	23.9	7.5e-08	139	160	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.12 139 PICS-FAAAGTCPYGKECPQMHG 160 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MSIRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY 60 TQPSTTAALA PSNSYLSWCP LCEGEIDVSN QTHKSLSVCS VHQSTWRFDD EDCIPEDGNS 120 LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP YGKECPQMHG DPCTTCGKQC LHPYRPSEGG 180 AHIKLCKRNN KRLETLKKSE EMECSVCLDR VLSKPTAAEK RFGLLPECDH AFCITCIRKW 240 RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA KLKSIDCRYF 300 DFGRDTCPFG GRCFYKHAYT DGRLEEPATV AVLHFHADNG SIEHARNIGL VLSIGGLL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MSIRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY  60
TQPSTTAALA PSNSYLSWCP LCEGEIDVSN QTHKSLSVCS VHQSTWRFDD EDCIPEDGNS  120
LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP YGKECPQMHG DPCTTCGKQC LHPYRPSEGG  180
AHIKLCKRNN KRLETLKKSE EMECSVCLDR VLSKPTAAEK RFGLLPECDH AFCITCIRKW  240
RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA KLKSIDCRYF  300
DFGRDTCPFG GRCFYKHAYT DGRLEEPATV AVLHFHADNG SIEHARNIGL VLSIGGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-116	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.12