PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG043080.11

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 328aa MW: 36451.3 Da PI: 7.0538

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG043080.11	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.7e-08	2	24	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t C f++ G C+yG+rC++ H+ TRIDC6AG043080.11 2 TQVCTFYQN-GVCSYGSRCRYEHV 24 677886666.***********997 PP
2	zf-CCCH	24	6.7e-08	109	130	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ GtC+yG C+ +Hg TRIDC6AG043080.11 109 PICS-FAAAGTCPYGKECPQMHG 130 5788.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
FTQVCTFYQN GVCSYGSRCR YEHVEVSSEY TQPSTTAALA PSNSYLSWCP LCEGEIDVSN 60 QTHKSLSVCS VHQSTWRFDD EDCIPEDGNS LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP 120 YGKECPQMHG DPCTTCGKQC LHPYRPSEGG AHIKLCKRNN KRLETLKKSE EMECSVCLDR 180 VLSKPTAAEK RFGLLPECDH AFCITCIRKW RSSSLTSSMD IDSTVKACPI CRKVSYYVIP 240 SATWYSSKEE KQDIIDGYKA KLKSIDCRYF DFGRDTCPFG GRCFYKHAYT DGRLEEPATV 300 AVLHFHADNG SIEHARNIGL VLSIGGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-100	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG043080.11