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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC6AG040720.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | MYB | ||||||||
| Protein Properties | Length: 302aa MW: 32581.4 Da PI: 4.6548 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 53.1 | 7.2e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT++Ed +l+ +++++G +W++ +r g+ R++k+c++rw +yl
TRIDC6AG040720.2 16 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 63
89******************************99************97 PP
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| 2 | Myb_DNA-binding | 51.7 | 2e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+eE+ ++++++lG++ W++Ia++++ gRt++++k+ w+++l
TRIDC6AG040720.2 69 RGNFTAEEEATVIKLHALLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 302 aa Download sequence |
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPRQAGLLR CGKSCRLRWI 60 NYLRPDLRRG NFTAEEEATV IKLHALLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKASE 120 QKPGVGGSKG EPADGDPDTP VPSLSSASSS MTTSEGSNEL EPVMDILGML ADAPTEALAT 180 AAPMPTSSCS SSSPTTCAGG GGGVEELLEL PDIDMDADIW SIIDDDVARL QQGDATVPCT 240 TKASPEEEGN EWWLADLEKE LGLWGPTEES QPQAGPHDQI GYPGQDMEMV MSSSYPQSRS 300 DH |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G16490.1 | 7e-69 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC6AG040720.2 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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