PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC6AG039350.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 415aa MW: 44985.9 Da PI: 5.9855 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.6 | 7.9e-22 | 85 | 140 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+k+l+L+ rqVk+WFqNrR+++k TRIDC6AG039350.6 85 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSKRLSLDARQVKFWFQNRRTQMK 140 678899***********************************************999 PP | |||||||
2 | START | 37.4 | 6.1e-13 | 299 | 411 | 1 | 92 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla.... 77 ela +a++elvk+a+ ++p+Wv+ es+n +e+l + + + + +ea+r+sg+v+ + ++ lve+l+d + +W+ ++ TRIDC6AG039350.6 299 ELAISAMDELVKMAQTDDPLWVTGLpgfpdkESLNFEEYLHSSQHCIGmkpvgFVSEASRESGLVIIDnSVALVETLMDER-RWSDMFScmia 390 57889******************9999999999999***9999666659999***********998651669*********.*******9999 PP EEEEEEEECTT......EEEE CS START 78 kaetlevissg......galq 92 ka++le +s+g gal TRIDC6AG039350.6 391 KATILEEVSNGiggsrnGALL 411 **********98777766665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence |
AGAFSSSPAL SLGLVRRHGR NDNAGGRDGG IGGRMFADGA GGAMARDAEA QNDSRSGSDH 60 LDAISGVGDD DDDAEPSGSN PRKRKKRYHR HTPQQIQELE ALFKECPHPD EKQRAELSKR 120 LSLDARQVKF WFQNRRTQMK TQLERHENAL LKQENEKLRT ENLTIREAMR TPMCGGCGSP 180 AMLGEVSLEE QHLRIENARL KDELNRVCTL ATKFLGKPVS LLSPLQLQPH LSMPLPNSSL 240 ELAVGGIGGI GSMQPSMHGM MSEYAGGASS SMGTVITPAR ATGSALASMV DIDRSVFLEL 300 AISAMDELVK MAQTDDPLWV TGLPGFPDKE SLNFEEYLHS SQHCIGMKPV GFVSEASRES 360 GLVIIDNSVA LVETLMDERR WSDMFSCMIA KATILEEVSN GIGGSRNGAL LLVSA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 81 | 87 | PRKRKKR |
2 | 82 | 86 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.2 | 1e-126 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC6AG039350.6 |