PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG039350.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 758aa MW: 82363.1 Da PI: 6.1804 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.7 | 7.4e-22 | 45 | 100 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+k+l+L+ rqVk+WFqNrR+++k TRIDC6AG039350.5 45 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSKRLSLDARQVKFWFQNRRTQMK 100 678899***********************************************998 PP | |||||||
2 | START | 183.4 | 1.3e-57 | 268 | 500 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmv.lallveellddkeqWdetla.... 77 ela +a++elvk+a+ ++p+Wv+ es+n +e+l + + + + +ea+r+sg+v+ + ++ lve+l+d + +W+ ++ TRIDC6AG039350.5 268 ELAISAMDELVKMAQTDDPLWVTGLpgfpdkESLNFEEYLHSSQHCIGmkpvgFVSEASRESGLVIIDnSVALVETLMDER-RWSDMFScmia 359 57889******************9999999999999***9999666659999***********998651669*********.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEEC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepks 158 ka++le +s+g gal lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d ++++ ++++lpSg+++++++ TRIDC6AG039350.5 360 KATILEEVSNGiggsrnGALLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLLSNQNsattsAGANLKCRRLPSGCVMQDTP 452 *************************************************************88777776654222358*************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng++kvtwveh++++++++h+ +r+l++sgla+ga++w+atlqrqce+ TRIDC6AG039350.5 453 NGYCKVTWVEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 500 **********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence |
GGAMARDAEA QNDSRSGSDH LDAISGVGDD DDDAEPSGSN PRKRKKRYHR HTPQQIQELE 60 ALFKECPHPD EKQRAELSKR LSLDARQVKF WFQNRRTQMK ILTRRFRAQT QLERHENALL 120 KQENEKLRTE NLTIREAMRT PMCGGCGSPA MLGEVSLEEQ HLRIENARLK DELNRVCTLA 180 TKFLGKPVSL LSPLQLQPHL SMPLPNSSLE LAVGGIGGIG SMQPSMHGMM SEYAGGASSS 240 MGTVITPARA TGSALASMVD IDRSVFLELA ISAMDELVKM AQTDDPLWVT GLPGFPDKES 300 LNFEEYLHSS QHCIGMKPVG FVSEASRESG LVIIDNSVAL VETLMDERRW SDMFSCMIAK 360 ATILEEVSNG IGGSRNGALL LMKAELQVLS PLVPIREVIF LRFCKQLAEG AWAVVDVSID 420 GLLSNQNSAT TSAGANLKCR RLPSGCVMQD TPNGYCKVTW VEHTEYDEAS VHQFYRPLLR 480 SGLAFGASRW LATLQRQCEC LAILMSSATV SPNEPTAISQ EGKRSMLKLA RRMTENFCAG 540 VSASSAREWS KLDGATGSIG EDVRVMARKS VSEPGEPPGV VLSAATSVWV PIAPEKLFDF 600 LRDEQLRAEW DILSNGGPMQ EMARIAKGHQ NGNSVSLLRA SAMSANQSSM LILQETCTDA 660 SGSIVVYAPV DIPAMQLVMN GGDSTYVALL PSGFAILPDG PSIGSEHKTG GSLLTVAFQI 720 LVNSQPTAKL TVESVETVNN LISCTIKKIK TALQCATP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 47 | PRKRKKR |
2 | 42 | 46 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG039350.5 |