PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG023860.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 301aa MW: 31884.3 Da PI: 9.6299 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6AG023860.8 97 KTKLCNKYNTAEGCKWGDKCHFAHGE 122 8***********************96 PP | |||||||
2 | zf-CCCH | 35.6 | 1.5e-11 | 267 | 292 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6AG023860.8 267 FKTKLCDNFTK-GSCTFGDRCHFAHGE 292 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
CRMSQHREMI IINKHSKCRL VPLYIRTSFT VELLFCPFGF TAGCPFGEGC HFLHYFPGGH 60 QAVAKMSNLG GQAFAHPQGR MPSGSAVPDG HPTPTVKTKL CNKYNTAEGC KWGDKCHFAH 120 GERELGKQTF INNSMPPHMG PRPTGHFGPP AMPSPGMATP AGFGASSTAK VSVNASLAGA 180 IIGRGGVNTK QISRVTGAKL AIRDHESNEA LKNIELEGTF DQINNASAML RELIFRISGG 240 ANAPPPGVIP AGGSHRGGGG SGQGSNFKTK LCDNFTKGSC TFGDRCHFAH GENELRKSAA 300 V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 6e-56 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG023860.8 |