PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG023860.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 293aa MW: 30419.2 Da PI: 9.8127

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG023860.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	89	114	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6AG023860.2 89 KTKLCNKYNTAEGCKWGDKCHFAHGE 114 8***********************96 PP
2	zf-CCCH	35.7	1.5e-11	259	284	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6AG023860.2 259 FKTKLCDNFTK-GSCTFGDRCHFAHGE 284 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
DGAAVGGKRT RESESFQTGV GSKSKPCTKF FSTAGCPFGE GCHFLHYFPG GHQAVAKMSN 60 LGGQAFAHPQ GRMPSGSAVP DGHPTPTVKT KLCNKYNTAE GCKWGDKCHF AHGERELGKQ 120 TFINNSMPPH MGPRPTGHFG PPAMPSPGMA TPAGFGASST AKVSVNASLA GAIIGRGGVN 180 TKQISRVTGA KLAIRDHESN EALKNIELEG TFDQINNASA MLRELIFRIS GGANAPPPGV 240 IPAGGSHRGG GGSGQGSNFK TKLCDNFTKG SCTFGDRCHF AHGENELRKS AAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	2e-54	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG023860.2