PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG023860.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 284aa MW: 29567.3 Da PI: 9.6412 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.4 | 1e-07 | 80 | 105 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ TRIDC6AG023860.11 80 KTKLCNKYNTAEGCKWGDKCHFAHGE 105 8***********************96 PP | |||||||
2 | zf-CCCH | 35.7 | 1.4e-11 | 250 | 275 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ TRIDC6AG023860.11 250 FKTKLCDNFTK-GSCTFGDRCHFAHGE 275 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence |
MSQSESFQTG VGSKSKPCTK FFSTAGCPFG EGCHFLHYFP GGHQAVAKMS NLGGQAFAHP 60 QGRMPSGSAV PDGHPTPTVK TKLCNKYNTA EGCKWGDKCH FAHGERELGK QTFINNSMPP 120 HMGPRPTGHF GPPAMPSPGM ATPAGFGASS TAKVSVNASL AGAIIGRGGV NTKQISRVTG 180 AKLAIRDHES NEALKNIELE GTFDQINNAS AMLRELIFRI SGGANAPPPG VIPAGGSHRG 240 GGGSGQGSNF KTKLCDNFTK GSCTFGDRCH FAHGENELRK SAAV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 2e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG023860.11 |