PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG022250.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 260aa MW: 28933.9 Da PI: 7.2044

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG022250.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.9	2.3e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstg+++eyss TRIDC6AG022250.4 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGRMFEYSS 59 79***********************************************96 PP
2	K-box	62.4	1.8e-21	71	156	1	85
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 yq++++++ e ++ ++ e++++++e+e+L +R++ G+dL+sLsl + + +eqqLe s+ k+R++K++ll +q+++l++k TRIDC6AG022250.4 71 YQNATNSQfEEINHDQQIFVEMTRMRNEMEKLDGAIRRYTGDDLSSLSLADVNDIEQQLEFSVAKVRARKHQLLNQQLDNLRRKVY 156 6777777777778889999****************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGRMFEYSSP 60 ASSLRDLIEQ YQNATNSQFE EINHDQQIFV EMTRMRNEME KLDGAIRRYT GDDLSSLSLA 120 DVNDIEQQLE FSVAKVRARK HQLLNQQLDN LRRKVYNELS IAHFASAIDP VCVCVCVCNQ 180 HGGDGKMAVM PPVLSMLTPA FPATPYYTGE ESSSTALQLT SPQLQLHAAE AAGFRLQPTQ 240 PNLQDPACSS LHAGHGLHLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.4	9e-41	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG022250.4