PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG022250.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 258aa MW: 28691.6 Da PI: 7.2044 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.3e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstg+++eyss TRIDC6AG022250.3 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGRMFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 62.4 | 1.8e-21 | 71 | 156 | 1 | 85 |
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 yq++++++ e ++ ++ e++++++e+e+L +R++ G+dL+sLsl + + +eqqLe s+ k+R++K++ll +q+++l++k TRIDC6AG022250.3 71 YQNATNSQfEEINHDQQIFVEMTRMRNEMEKLDGAIRRYTGDDLSSLSLADVNDIEQQLEFSVAKVRARKHQLLNQQLDNLRRKVY 156 6777777777778889999****************************************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGRMFEYSSP 60 ASSLRDLIEQ YQNATNSQFE EINHDQQIFV EMTRMRNEME KLDGAIRRYT GDDLSSLSLA 120 DVNDIEQQLE FSVAKVRARK HQLLNQQLDN LRRKVYNELS IAHFASAIDP VCVCVCVCHG 180 GDGKMAVMPP VLSMLTPAFP ATPYYTGEES SSTALQLTSP QLQLHAAEAA GFRLQPTQPN 240 LQDPACSSLH AGHGLHLW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 3e-41 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG022250.3 |