PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC6AG022250.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 175aa MW: 19967.9 Da PI: 9.8679 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.9 | 1.1e-27 | 44 | 94 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstg+++eyss TRIDC6AG022250.2 44 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGRMFEYSS 94 79***********************************************96 PP | |||||||
2 | K-box | 46.9 | 1.2e-16 | 106 | 175 | 1 | 69 |
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 yq++++++ e ++ ++ e++++++e+e+L +R++ G+dL+sLsl + + +eqqLe s+ k+R++K TRIDC6AG022250.2 106 YQNATNSQfEEINHDQQIFVEMTRMRNEMEKLDGAIRRYTGDDLSSLSLADVNDIEQQLEFSVAKVRARK 175 6777777777778889999**************************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence |
MIFFLLLTGE RPRGRPETRK AIAWFLFASI VAVAEMGRGK IEIKRIENAT NRQVTFSKRR 60 GGLLKKANEL AVLCDARVGV VIFSSTGRMF EYSSPASSLR DLIEQYQNAT NSQFEEINHD 120 QQIFVEMTRM RNEMEKLDGA IRRYTGDDLS SLSLADVNDI EQQLEFSVAK VRARK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-40 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC6AG022250.2 |