PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG020940.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 362aa MW: 37765.1 Da PI: 6.1032

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG020940.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.9	8.6e-08	55	100	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC+ C +H+ H++vp+ TRIDC6AG020940.3 55 VWVCEVCELAPAAVTCKADAAALCAACDADIHHAnplarrHERVPV 100 689****************************645599999999986 PP
2	CCT	71.1	2.7e-24	287	330	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k+a TRIDC6AG020940.3 287 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRA 330 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
QGLGRYWGVG GRRCGSCRGS PAAVHCRTCD GGSGDGAYLC AGCGEGHARA GHERVWVCEV 60 CELAPAAVTC KADAAALCAA CDADIHHANP LARRHERVPV QPIGSSSPEG QEQEQDAFVM 120 SFGGSVDGEK QQNPVVNLND ALEAGAGGKE NVKLDFLFAD MMDPFFGSEL PRFPHADSVV 180 PSGGAVELDF GGVAAPVVVS NPSYSSYTAA SLGGSQGSSS EVGLVPDVIC GRGGGIIELD 240 FAQSKAAYLP YTPTPSHSTV SSVDVGSVPE RSDSAVAAAT PATGEGREAR LMRYREKRKN 300 RRFEKTIRYA SRKAYAESRP RVKGRFAKRA DDADTDAVAA ATITTPGPCV LDFGSYGVVP 360 TF

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

QGLGRYWGVG GRRCGSCRGS PAAVHCRTCD GGSGDGAYLC AGCGEGHARA GHERVWVCEV  60
CELAPAAVTC KADAAALCAA CDADIHHANP LARRHERVPV QPIGSSSPEG QEQEQDAFVM  120
SFGGSVDGEK QQNPVVNLND ALEAGAGGKE NVKLDFLFAD MMDPFFGSEL PRFPHADSVV  180
PSGGAVELDF GGVAAPVVVS NPSYSSYTAA SLGGSQGSSS EVGLVPDVIC GRGGGIIELD  240
FAQSKAAYLP YTPTPSHSTV SSVDVGSVPE RSDSAVAAAT PATGEGREAR LMRYREKRKN  300
RRFEKTIRYA SRKAYAESRP RVKGRFAKRA DDADTDAVAA ATITTPGPCV LDFGSYGVVP  360
TF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	7e-26	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG020940.3