PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG018730.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 860aa MW: 95349.5 Da PI: 6.0594 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 1e-23 | 67 | 168 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F + TRIDC6AG018730.6 67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELVAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--W 155 99*****************************86555544..8************************************************..7 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ TRIDC6AG018730.6 156 NDNNQLLLGIRRA 168 777778***9997 PP | |||||||
2 | Auxin_resp | 120.8 | 1.1e-39 | 193 | 276 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k TRIDC6AG018730.6 193 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 276 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 860 aa Download sequence |
MESQIPNYPN LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGNAS 60 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELVAK DLHGNEWKFR 120 HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR SQTVMPSSVL 180 SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM 240 LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 300 TYPMYSSPFP MRLKRPWPTG LPSLYGTGGK EDDLTSSLMW LRDGANPGFQ SFSFGGLGMS 360 PWMQPMMDSS LLGLQPDMYQ AMSAAAFQNT TKQVSPTLLQ FQQPQNIAGR SALLSSQILQ 420 QVQPQFQEMH HQNINDSAIQ GHNQSEYLQQ QLQRCQSFNG QKSPPPQQQE SHHQHQQQQS 480 QCMQTPQHQQ MQEQKHSPDF QCVPNGLSVF SQLSSTNQSP PSTLQTVSAF SQQQNLQDRN 540 ISSLSPSNVP SMHDTLRPFP SEAGSNLQGV PRTTPVPVSD PWSSKRVAME SVIPSSSHVN 600 SPHIQHLDSA PSNIPQSSSL APLPGRECLV DQDGNSDNQN HLLFGVNIDS QSLLMQGGIP 660 SLQEDNGCIA SLQDDNDSST IPYSTCNFLS PSQNDFPLNE ALASSGCLDE SGYASFSENS 720 DHVNQPTAAF VKVYKSGAFG RLLDITKFSS YHELRSEVGR LFGLDGQLED PARSGWQLVF 780 VDREDDILLV GDDPWQEFVN SVSCIKVLTP QEVQQMGKQG IDLLSSAPAR RLGNSCDNYA 840 GRQESRSLST VIASVGSVEF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG018730.6 |