PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC6AG018730.16
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 593aa    MW: 67230.2 Da    PI: 8.997
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC6AG018730.16genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   
  TRIDC6AG018730.16 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELVAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI-- 215
                        99*****************************86555544..8************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  TRIDC6AG018730.16 216 WNDNNQLLLGIRRA 229
                        7777778***9997 PP
2Auxin_resp121.56.4e-40254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  TRIDC6AG018730.16 254 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 337
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    
YLLRLLLRRF SFSASEEHRC LNSELWHACA GPLVSLPAVG SRVLYFPQGH SEQVSASTNK  60
EMESQIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQELKD PFLPAELGNA  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFT QQPPAQELVA KDLHGNEWKF  180
RHIFRGQPKR HLLTTGWSVF ISAKRLVAGD SVLFIWNDNN QLLLGIRRAN RSQTVMPSSV  240
LSSDSMHIGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRISVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPARWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTYPMYSSPF PMRLKRPWPT GLPSLYGGKE DDLTSSLMWL RDGANPGFQS FSFGGLGMSP  420
WMQPMMDSSL LGLQPDMYQA MSAAAFQNTT KQVSPTLLQF QQPQNIAGRS ALLSSQILQQ  480
VQPQFQEMHH QNINDSAIQG HNQSEYLQQQ LQRCQSFNGQ KSPPPQQQES HHQHQQQQSQ  540
CMQTPQHQQI FPPPISLHLP HCRQFQRSHS SRTFKTEISA LFLHRMSRPC MTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein