PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG017660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26117.7 Da PI: 8.874 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.2 | 1.1e-23 | 10 | 60 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++ + rqv +skRr gi+KKA EL vLCda+vav+++sstgk + ++s TRIDC6AG017660.1 10 KRIQDATGRQVCYSKRRSGIMKKARELAVLCDAQVAVVVLSSTGKHHHFCS 60 79*********************************************9986 PP | |||||||
2 | K-box | 83.9 | 3.4e-28 | 72 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq+++g+sl++++ e++q+ l++Lk+ ++nL++e+R+++GedL+ L++ eL+ Leq ++ +l+ +R++K++++++q+e+ ++k k q+ k+ TRIDC6AG017660.1 72 YQQATGTSLWTEQDEEMQRTLSRLKDINRNLRTEIRQRMGEDLDALEFGELRGLEQSVDAALEVVRQRKYQVITRQTETYKRKVKHSQKVYKS 164 89999**************************************************************************************** PP K-box 94 Lrkkl 98 L+++l TRIDC6AG017660.1 165 LQQEL 169 *9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MGRLGKFEIK RIQDATGRQV CYSKRRSGIM KKARELAVLC DAQVAVVVLS STGKHHHFCS 60 DGADIKGILN RYQQATGTSL WTEQDEEMQR TLSRLKDINR NLRTEIRQRM GEDLDALEFG 120 ELRGLEQSVD AALEVVRQRK YQVITRQTET YKRKVKHSQK VYKSLQQELG FMDNPAFGFM 180 DNPMMGGWDG VAAVEMGGGG SEADMYAFHA VSSQLDLHGM AYRRSDCPLF G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-53 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG017660.1 |