PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG014880.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 1102aa MW: 122477 Da PI: 6.2401

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG014880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.3	2.5e-22	99	200	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F ++ TRIDC6AG014880.1 99 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RD 188 99****************************9999986.*********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ TRIDC6AG014880.1 189 EKQQLLLGIRRA 200 88889**997 PP
2	Auxin_resp	114.1	1.3e-37	225	308	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+ +rr++Gt++g+sdldpvrW+nS+WrsL+ TRIDC6AG014880.1 225 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsSQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 308 799******************************9899*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1102 aa Download sequence
MAQSPASSAV AASAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQADP 60 DTDEVYAQMT LQPVNTYAKE ALQLSELALR QARPQMEFFC KTLTASDTST HGGFSVPRRA 120 AEKIFPSLDF SLQPPCQELQ ARDIHDNVWT FRHIFRGQPK RHLLTTGWSL FVSGKKLFAG 180 DSVIFVRDEK QQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHASA NTSPFTIFYN 240 PRASPTEFVI PFAKYQKAMY SSQISLGMRF RMMCETEELG TRRYMGTITG ISDLDPVRWK 300 NSQWRSLQVG WDESAAGERR NRVSIWEIEP LAAPFFICPQ PFFGVKRPRQ LDDESLEMES 360 LMKRAMPWLG EEVCIKDPQT QSATMPGLSL VQWMNMNRQQ SSSLASTAMQ SEYLRSASNP 420 AMQNIGAADL ARQLYMQNHL LQQNSMQFNP PKLHQQMKPI NDLSNAALPL NQLSAIRNHQ 480 DQKQDQQRQQ QSSIQAIPLS QAQAQTNIVQ AQVILQNQMQ QQQQQKQPPP SPTQNQHGAS 540 GQHLLQSHQL QDQNLQMQQQ QLLLHQQLQQ QQQQQQLNKL PGQLANLASQ QTQLSDQELH 600 LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS 660 SLQTTQLPPP IQQEQQQQQQ QKPSQKQVAP TYVSEAAFAQ ISSTSVIPKT GNATIVPGAA 720 QSAVTEEIPS CSTSPSTANG NHLAQPTIGR NDHCKTSTEK VPHSIAQMSI LIPIEAVSVT 780 PVTTKELPKL NNGVKSSAIT SKLPNVVSGL QNFMNNALPT DNLETASSAT SLWPSQTDGL 840 LHQGFATSNF NQHQMFKDEL PDVEIQGVDP SNSALFGMNN DGPLGFPMET EGLLENALDS 900 VKYQNHFSTD DENNYQMQKD ARQEISTSMV SQSFGQSDMA FNSIDSAIND GALMNRSSWP 960 PAAPPQRMRT FTKVYKRGAV GRSIDIGRFS GYGELNQALA RMFGIEGQLE DRQRIGWKLV 1020 YTDHEDDVLL LGDDPWEEFV NCVKCIRILS PQEVQKMSLD GDLGSNVLPN QACSSSDGGN 1080 TWKPRYEQNS GNPSIGPYDQ FE

Sequence ? help Back to Top

Protein Sequence Length: 1102 aa Download sequence

MAQSPASSAV AASAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQADP  60
DTDEVYAQMT LQPVNTYAKE ALQLSELALR QARPQMEFFC KTLTASDTST HGGFSVPRRA  120
AEKIFPSLDF SLQPPCQELQ ARDIHDNVWT FRHIFRGQPK RHLLTTGWSL FVSGKKLFAG  180
DSVIFVRDEK QQLLLGIRRA NRQPTNISSS VLSSDSMHIG VLAAAAHASA NTSPFTIFYN  240
PRASPTEFVI PFAKYQKAMY SSQISLGMRF RMMCETEELG TRRYMGTITG ISDLDPVRWK  300
NSQWRSLQVG WDESAAGERR NRVSIWEIEP LAAPFFICPQ PFFGVKRPRQ LDDESLEMES  360
LMKRAMPWLG EEVCIKDPQT QSATMPGLSL VQWMNMNRQQ SSSLASTAMQ SEYLRSASNP  420
AMQNIGAADL ARQLYMQNHL LQQNSMQFNP PKLHQQMKPI NDLSNAALPL NQLSAIRNHQ  480
DQKQDQQRQQ QSSIQAIPLS QAQAQTNIVQ AQVILQNQMQ QQQQQKQPPP SPTQNQHGAS  540
GQHLLQSHQL QDQNLQMQQQ QLLLHQQLQQ QQQQQQLNKL PGQLANLASQ QTQLSDQELH  600
LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS  660
SLQTTQLPPP IQQEQQQQQQ QKPSQKQVAP TYVSEAAFAQ ISSTSVIPKT GNATIVPGAA  720
QSAVTEEIPS CSTSPSTANG NHLAQPTIGR NDHCKTSTEK VPHSIAQMSI LIPIEAVSVT  780
PVTTKELPKL NNGVKSSAIT SKLPNVVSGL QNFMNNALPT DNLETASSAT SLWPSQTDGL  840
LHQGFATSNF NQHQMFKDEL PDVEIQGVDP SNSALFGMNN DGPLGFPMET EGLLENALDS  900
VKYQNHFSTD DENNYQMQKD ARQEISTSMV SQSFGQSDMA FNSIDSAIND GALMNRSSWP  960
PAAPPQRMRT FTKVYKRGAV GRSIDIGRFS GYGELNQALA RMFGIEGQLE DRQRIGWKLV  1020
YTDHEDDVLL LGDDPWEEFV NCVKCIRILS PQEVQKMSLD GDLGSNVLPN QACSSSDGGN  1080
TWKPRYEQNS GNPSIGPYDQ FE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20730.2	1e-175	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG014880.1