PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC6AG006620.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 119aa MW: 12621.5 Da PI: 8.3935 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.4 | 1.2e-38 | 15 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+ap+f++eq +++f ++hk+FGasnv+kll+ lp +r++a++++ yeA+ar++dPvyG+v++i++lqqq +l+a TRIDC6AG006620.2 15 PCGACKFLRRKCVSGCVFAPHFCHEQgAAHFGAIHKVFGASNVSKLLTGLPSIDRREAAATISYEAQARLHDPVYGCVAHIFALQQQAVNLQA 107 7*************************89***************************************************************** PP DUF260 93 elallkee 100 +l++lk++ TRIDC6AG006620.2 108 QLESLKAQ 115 ***99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence |
SIDQVAGAMT GFPSPCGACK FLRRKCVSGC VFAPHFCHEQ GAAHFGAIHK VFGASNVSKL 60 LTGLPSIDRR EAAATISYEA QARLHDPVYG CVAHIFALQQ QAVNLQAQLE SLKAQAPQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-51 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC6AG006620.2 |