PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5BG073000.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 315aa MW: 34822.1 Da PI: 9.2759 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 112 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g TRIDC5BG073000.18 112 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 161 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.3 | 1.9e-13 | 204 | 254 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g TRIDC5BG073000.18 204 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAAIRFNG 254 89********.7******...5...334336**********99**********99987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence |
MVLDLNVESP ADSGTSSSSV LNSADAGGFR FGLLGSPDDD DWSGEPAPAA SGFVTRQLFP 60 ASPPAPGMMM GQQAPAPPMA PVWQPRRAEE LVAAQRVAPA KKTRRGPRSR SSQYRGVTFY 120 RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GLEADINFNL SDYEEDLKQM 180 RNWTKEEFVH ILRRQSTGFA RGSSKYRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDSEVE 240 AARAYDRAAI RFNGREAVTN FESSSYNGDA PPDAENEGTT TQSQLLMLML LTWIFGCRNL 300 PRTIPSGTTS SPAFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.1 | 2e-90 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5BG073000.18 |