PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC5BG063070.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 628aa MW: 66063.1 Da PI: 7.1769

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC5BG063070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.5	1e-15	297	356	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g TRIDC5BG063070.1 297 SKYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 356 89*****************655454478446***********************98 PP
2	AP2	40	9.9e-13	401	450	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I +s +k +lg+f + +Aa+a++ a+ k++g TRIDC5BG063070.1 401 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 450 9*************999754...5******99**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MTNGGHSMSG ASIAGGAGGW LGFSLSPHVA MDAAAGSGIV DMAGHHHAHH GGVYYHPDAV 60 ASSPMSFYFG GGDNVSAASG GYYSGISALP LRSDGSLCLA DALRRSEQKH HGAEVSAPPK 120 LEDFLGASPA MALTLDNSGY YYGGQGHGHG DAGEGQHQLP SAMMPGSGGH HMYYDAHAAL 180 LDEQAAATSA AMEAAGWMAR AGDVYEVDGG NGEDGGGAIV TAGHDNPGGY VHPLTLSMSS 240 GSQSSCVTMQ QAAAQAHAYV GQATAASKKR GAGAGAGQNK QPVVHRKCID TFGQRTSKYR 300 GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGASTH 360 INFPVEDYQE ELEVMKNMTR QEYVAHLRRK SSGFSRGASM YRGVTRHHQQ GRWQARIGRV 420 SGNKDLYLGT FSAEADAAEA YDVAAIKFRG LNAVTNFDIN RYDVDKIMES STLLPGDQVR 480 RRKDGPDDSA AVVASAAAAL VQAGSATDYW RQPAAVTTDE HSRHHLGLLS SESFSLLRGV 540 VSVDGDAAVA QQGQGNRMSG ASSLATSLSN SREQSPDQGG GLAMLFARPA APKLASSLPM 600 GTWVSSPAPA RPGVSVAHMP MFAAWADA

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MTNGGHSMSG ASIAGGAGGW LGFSLSPHVA MDAAAGSGIV DMAGHHHAHH GGVYYHPDAV  60
ASSPMSFYFG GGDNVSAASG GYYSGISALP LRSDGSLCLA DALRRSEQKH HGAEVSAPPK  120
LEDFLGASPA MALTLDNSGY YYGGQGHGHG DAGEGQHQLP SAMMPGSGGH HMYYDAHAAL  180
LDEQAAATSA AMEAAGWMAR AGDVYEVDGG NGEDGGGAIV TAGHDNPGGY VHPLTLSMSS  240
GSQSSCVTMQ QAAAQAHAYV GQATAASKKR GAGAGAGQNK QPVVHRKCID TFGQRTSKYR  300
GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGASTH  360
INFPVEDYQE ELEVMKNMTR QEYVAHLRRK SSGFSRGASM YRGVTRHHQQ GRWQARIGRV  420
SGNKDLYLGT FSAEADAAEA YDVAAIKFRG LNAVTNFDIN RYDVDKIMES STLLPGDQVR  480
RRKDGPDDSA AVVASAAAAL VQAGSATDYW RQPAAVTTDE HSRHHLGLLS SESFSLLRGV  540
VSVDGDAAVA QQGQGNRMSG ASSLATSLSN SREQSPDQGG GLAMLFARPA APKLASSLPM  600
GTWVSSPAPA RPGVSVAHMP MFAAWADA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-111	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC5BG063070.1