PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG061180.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27313.4 Da    PI: 8.0598
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG061180.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.4e-271059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+++fs+ g+ly +ss
  TRIDC5BG061180.2 10 RIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALVLFSHAGRLYQFSS 59
                      9***********************************************96 PP
2K-box873.6e-29841731099
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       +  ++++ + e+  Lk+++e Lq++qR+llGedL +Ls  eL qLe+q+ k l++iRs+K+++ll+++ +l++ke+ l+++n++L++kl 
  TRIDC5BG061180.2  84 TRDEMQNNYLEYMELKARVEVLQHSQRNLLGEDLAPLSTTELDQLESQVGKTLRQIRSRKTQVLLDEMCDLKRKEQILEDANMTLKRKLG 173
                       567899*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALVLFSH AGRLYQFSSS  60
SNMLKTLERY QRYIFASQDA VVPTRDEMQN NYLEYMELKA RVEVLQHSQR NLLGEDLAPL  120
STTELDQLES QVGKTLRQIR SRKTQVLLDE MCDLKRKEQI LEDANMTLKR KLGEIELEAT  180
PDPPQQQQQM WQGDRGVPPH TPPQPEHFFQ ALECYPSLQP VFRGMDVNQP PPAWMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-73MIKC_MADS family protein